Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC016550.1-201ENST00000505348 785 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA9P31269 AC008565.1-201ENST00000509046 885 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 SNORD59.2-201ENST00000516873 68 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 RNU6-711P-201ENST00000517255 106 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXA9P31269 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.12□□□□□ -1.91
HOXA9P31269 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA9P31269 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA9P31269 AC012182.1-201ENST00000570133 895 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA9P31269 AL390838.2-201ENST00000602394 274 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 MTATP6P2-201ENST00000603319 678 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AL590282.1-201ENST00000610379 1136 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AL359535.1-201ENST00000612100 1087 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AP000943.4-201ENST00000622912 357 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.12□□□□□ -1.91
HOXA9P31269 AC106858.1-201ENST00000637497 429 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXA9P31269 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXA9P31269 AL355578.1-201ENST00000607405 1328 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AC104446.1-201ENST00000613728 1321 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA9P31269 FAM35CP-201ENST00000554755 2470 ntBASIC3.12□□□□□ -1.91
HOXA9P31269 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXA9P31269 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA9P31269 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA9P31269 U3.11-201ENST00000364476 212 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 SNORA9.2-201ENST00000365361 133 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA9P31269 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA9P31269 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 RNA5SP80-201ENST00000410475 111 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 RNA5SP184-201ENST00000411071 108 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 VN1R51P-201ENST00000411675 945 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC006960.1-201ENST00000419980 153 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA9P31269 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 RPS26P30-201ENST00000443431 335 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 Z77249.1-201ENST00000444622 1175 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 GXYLT1P1-201ENST00000446657 490 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA9P31269 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 AL024509.2-201ENST00000493462 493 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC111000.2-201ENST00000507775 550 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC118465.1-201ENST00000513820 1271 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA9P31269 SCGB1D5P-201ENST00000515134 247 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 RNU5A-7P-201ENST00000515979 116 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 AP004371.1-201ENST00000525240 214 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA9P31269 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXA9P31269 AC090751.1-201ENST00000566966 267 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 MTCO3P24-201ENST00000572729 782 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXA9P31269 ATP1B3P1-201ENST00000605365 821 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA9P31269 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA9P31269 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
HOXA9P31269 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 XPOTP1-201ENST00000443317 2398 ntBASIC3.11□□□□□ -1.91
HOXA9P31269 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA9P31269 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA9P31269 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA9P31269 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HOXA9P31269 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA9P31269 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.1□□□□□ -1.91
HOXA9P31269 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA9P31269 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA9P31269 RNU6-1293P-201ENST00000384077 107 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 RNU6-207P-201ENST00000384137 107 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 SNORD65C-201ENST00000390962 71 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 RPS3AP26-201ENST00000398259 784 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 AC092745.2-202ENST00000411880 369 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA9P31269 HSPE1P1-201ENST00000421494 318 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 DEFB130D-201ENST00000426866 237 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA9P31269 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA9P31269 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA9P31269 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA9P31269 FTH1P1-201ENST00000437933 532 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 TRIM60P18-201ENST00000441518 828 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA9P31269 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.1□□□□□ -1.91
HOXA9P31269 RPS26P21-201ENST00000475397 348 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA9P31269 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA9P31269 AC008494.2-201ENST00000514544 370 ntBASIC3.1□□□□□ -1.91
HOXA9P31269 RNA5SP217-201ENST00000515959 91 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 153.5 ms