Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 OR5AP1P-201ENST00000529730 940 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AC009063.1-201ENST00000563342 702 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AC012417.1-201ENST00000582307 1039 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 MIR5684-201ENST00000585074 65 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 OR4G1P-201ENST00000588632 938 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 RNU4-89P-201ENST00000607443 133 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 AL159169.3-201ENST00000608871 561 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 AC108747.1-201ENST00000609508 535 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 RMST_9.1-201ENST00000619945 193 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SMARCA1P28370 CYP3A51P-201ENST00000633513 256 ntBASIC4.74□□□□□ -1.65
SMARCA1P28370 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SMARCA1P28370 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SMARCA1P28370 DCAF13P1-201ENST00000495256 1330 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SMARCA1P28370 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMARCA1P28370 AC011266.1-201ENST00000624119 3569 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 PABPC1P7-201ENST00000413177 1513 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMARCA1P28370 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SMARCA1P28370 RNA5SP130-201ENST00000364431 114 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.73□□□□□ -1.65
SMARCA1P28370 RNU6-356P-201ENST00000384140 107 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 RNU6-809P-201ENST00000384461 107 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 SNORA40.3-201ENST00000390964 122 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 RPL31P1-201ENST00000398116 372 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AL513174.1-201ENST00000423182 629 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.73□□□□□ -1.65
SMARCA1P28370 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.73□□□□□ -1.65
SMARCA1P28370 OR4C10P-201ENST00000434991 931 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC4.73□□□□□ -1.65
SMARCA1P28370 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.73□□□□□ -1.65
SMARCA1P28370 AC093767.1-201ENST00000504523 156 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.73□□□□□ -1.65
SMARCA1P28370 AC109464.2-201ENST00000510242 943 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 HIGD1AP3-201ENST00000515857 278 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 PAICSP4-201ENST00000517543 1253 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SMARCA1P28370 MTND4LP18-201ENST00000526864 291 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.73□□□□□ -1.65
SMARCA1P28370 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC4.73□□□□□ -1.65
SMARCA1P28370 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.73□□□□□ -1.65
SMARCA1P28370 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AC098614.4-201ENST00000607601 462 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AC080013.4-201ENST00000607624 649 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AC004825.2-201ENST00000616634 455 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AC009318.4-201ENST00000620496 486 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.73□□□□□ -1.65
SMARCA1P28370 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SMARCA1P28370 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SMARCA1P28370 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMARCA1P28370 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMARCA1P28370 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMARCA1P28370 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMARCA1P28370 MTCO1P24-201ENST00000515438 1558 ntBASIC4.73□□□□□ -1.65
SMARCA1P28370 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SMARCA1P28370 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SMARCA1P28370 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 RNU6-533P-201ENST00000384144 107 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 AL603766.1-201ENST00000407763 664 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 MIR1250-201ENST00000408098 113 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 Y_RNA.598-201ENST00000410480 95 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 HSPE1P12-201ENST00000412576 301 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 USP9YP13-201ENST00000417797 480 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AL035410.1-201ENST00000427409 427 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 RPL23AP33-201ENST00000442301 452 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 HSPE1P28-201ENST00000443139 211 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AC244505.5-201ENST00000443639 207 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.72□□□□□ -1.65
SMARCA1P28370 AL590365.1-201ENST00000450788 243 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 MTCO1P42-201ENST00000457379 726 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AC093899.1-201ENST00000457984 376 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.72□□□□□ -1.65
SMARCA1P28370 LARP1BP2-201ENST00000486594 519 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 RPL29P14-201ENST00000495837 428 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.72□□□□□ -1.65
SMARCA1P28370 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SMARCA1P28370 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.72□□□□□ -1.65
SMARCA1P28370 AC108064.1-201ENST00000513791 460 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 MIR2116-201ENST00000517221 80 ntBASIC4.72□□□□□ -1.65
SMARCA1P28370 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms