Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL355578.1-201ENST00000607405 1328 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 AL139811.1-201ENST00000424779 2299 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL6A3P12111 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
COL6A3P12111 MIR708-201ENST00000390708 88 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 AL021407.1-201ENST00000404531 386 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC2.26□□□□□ -2.05
COL6A3P12111 AC009487.2-201ENST00000420969 6821 ntBASIC2.26□□□□□ -2.05
COL6A3P12111 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.26□□□□□ -2.05
COL6A3P12111 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL6A3P12111 RNA5SP37-201ENST00000365420 130 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 SNORA41-201ENST00000384675 132 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL6A3P12111 AC093151.1-201ENST00000427711 313 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 RPL21P41-201ENST00000459863 264 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 RNA5SP200-201ENST00000516360 103 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 AL356280.1-201ENST00000603614 379 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
COL6A3P12111 MIR96-201ENST00000362288 78 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL6A3P12111 RPS15AP6-201ENST00000420703 385 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.25□□□□□ -2.05
COL6A3P12111 AC245517.2-201ENST00000442890 346 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 IGKV2D-36-201ENST00000518643 226 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 AMZ2P1-203ENST00000565833 850 ntBASIC2.25□□□□□ -2.05
COL6A3P12111 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL6A3P12111 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL6A3P12111 SNORA67.5-201ENST00000391036 107 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 AL353093.1-201ENST00000441292 436 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 snoU109.4-201ENST00000458953 143 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 TOMM22P6-201ENST00000465035 409 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 AC008526.1-201ENST00000509149 338 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.24□□□□□ -2.05
COL6A3P12111 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL6A3P12111 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.24□□□□□ -2.05
COL6A3P12111 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL6A3P12111 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL6A3P12111 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL6A3P12111 SNORA25.6-201ENST00000364121 118 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 AL512633.1-201ENST00000399931 655 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.24□□□□□ -2.05
COL6A3P12111 MTCO2P17-201ENST00000424336 677 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 RPL7P37-201ENST00000425095 738 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL6A3P12111 NAMPTP2-201ENST00000505629 1115 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 ATP5EP1-201ENST00000510257 156 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 AC110588.1-201ENST00000559699 137 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
COL6A3P12111 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC2.24□□□□□ -2.05
COL6A3P12111 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
COL6A3P12111 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC2.24□□□□□ -2.05
COL6A3P12111 RNU1-75P-201ENST00000347264 129 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 ATG3P1-201ENST00000419507 911 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 HMGB1P31-201ENST00000437242 427 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 AC034244.1-201ENST00000507687 207 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 RNA5SP182-201ENST00000516064 82 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 RNU6-1231P-201ENST00000517185 103 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.24□□□□□ -2.05
COL6A3P12111 AC012182.1-201ENST00000570133 895 ntBASIC2.24□□□□□ -2.05
COL6A3P12111 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC2.24□□□□□ -2.05
COL6A3P12111 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC2.24□□□□□ -2.05
COL6A3P12111 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL6A3P12111 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.24□□□□□ -2.05
COL6A3P12111 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL6A3P12111 RNA5SP502-201ENST00000362694 119 ntBASIC2.23□□□□□ -2.05
COL6A3P12111 AC017099.1-201ENST00000448261 1028 ntBASIC2.23□□□□□ -2.05
COL6A3P12111 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.23□□□□□ -2.05
COL6A3P12111 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.23□□□□□ -2.05
COL6A3P12111 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.23□□□□□ -2.05
COL6A3P12111 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.23□□□□□ -2.05
COL6A3P12111 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL6A3P12111 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
COL6A3P12111 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL6A3P12111 MTATP6P11-201ENST00000428071 670 ntBASIC2.23□□□□□ -2.05
COL6A3P12111 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.23□□□□□ -2.05
COL6A3P12111 SNRPFP4-201ENST00000456366 242 ntBASIC2.23□□□□□ -2.05
COL6A3P12111 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.23□□□□□ -2.05
COL6A3P12111 AC025260.1-201ENST00000548858 430 ntBASIC2.23□□□□□ -2.05
COL6A3P12111 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.23□□□□□ -2.05
COL6A3P12111 GTF2H2B-203ENST00000508065 1432 ntBASIC2.23□□□□□ -2.05
COL6A3P12111 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL6A3P12111 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL6A3P12111 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL6A3P12111 HMGB3P23-201ENST00000414981 585 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 MED6P1-201ENST00000439659 713 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC2.22□□□□□ -2.05
COL6A3P12111 AL590399.6-201ENST00000446396 307 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 7SK.7-201ENST00000603504 247 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
COL6A3P12111 RNU2-32P-201ENST00000411193 191 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 RPL23AP14-201ENST00000468281 468 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 AC126182.1-201ENST00000478134 357 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 AC105137.2-201ENST00000569073 466 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL6A3P12111 MIR7973-1-201ENST00000614683 76 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
COL6A3P12111 OR11H5P-202ENST00000641612 1325 ntBASIC2.22□□□□□ -2.05
COL6A3P12111 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL6A3P12111 KPNA2P1-201ENST00000458289 1591 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms