Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ANAPC10P1-201ENST00000395991 556 ntBASIC3.59□□□□□ -1.83
SIX3O95343 RPL7P60-201ENST00000397636 735 ntBASIC3.59□□□□□ -1.83
SIX3O95343 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AL356131.1-201ENST00000405826 414 ntBASIC3.59□□□□□ -1.83
SIX3O95343 RN7SKP284-201ENST00000411002 343 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AC127526.1-201ENST00000417526 366 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 GOT2P5-201ENST00000433995 546 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AL590103.1-201ENST00000434488 307 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AC084290.1-201ENST00000434995 374 ntBASIC3.59□□□□□ -1.83
SIX3O95343 RPS25P9-201ENST00000435591 252 ntBASIC3.59□□□□□ -1.83
SIX3O95343 MTND3P1-201ENST00000441336 220 ntBASIC3.59□□□□□ -1.83
SIX3O95343 SETD6P1-201ENST00000444575 317 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX3O95343 RPS29P31-201ENST00000446147 164 ntBASIC3.59□□□□□ -1.83
SIX3O95343 snoU13.8-201ENST00000458890 104 ntBASIC3.59□□□□□ -1.83
SIX3O95343 UBE2CP3-201ENST00000502715 450 ntBASIC3.59□□□□□ -1.83
SIX3O95343 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
SIX3O95343 AC093281.2-201ENST00000510153 597 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AC010587.2-201ENST00000511727 448 ntBASIC3.59□□□□□ -1.83
SIX3O95343 FABP5P12-201ENST00000515543 389 ntBASIC3.59□□□□□ -1.83
SIX3O95343 RNU6-415P-201ENST00000516252 97 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
SIX3O95343 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX3O95343 CCNG2P1-201ENST00000549521 1000 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.59□□□□□ -1.83
SIX3O95343 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX3O95343 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 AC087499.8-201ENST00000578406 226 ntBASIC3.59□□□□□ -1.83
SIX3O95343 MIR4738-201ENST00000579134 87 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 VN1R78P-201ENST00000597393 564 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AL451086.1-201ENST00000605596 223 ntBASIC3.59□□□□□ -1.83
SIX3O95343 SNORA51-201ENST00000606420 132 ntBASIC3.59□□□□□ -1.83
SIX3O95343 CR392039.5-201ENST00000623201 510 ntBASIC3.59□□□□□ -1.83
SIX3O95343 AL078595.3-201ENST00000623815 1166 ntBASIC3.59□□□□□ -1.83
SIX3O95343 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.59□□□□□ -1.83
SIX3O95343 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.59□□□□□ -1.83
SIX3O95343 RPS4XP5-202ENST00000449995 1334 ntBASIC3.59□□□□□ -1.83
SIX3O95343 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.59□□□□□ -1.83
SIX3O95343 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.59□□□□□ -1.84
SIX3O95343 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.59□□□□□ -1.84
SIX3O95343 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
SIX3O95343 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.84
SIX3O95343 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.59□□□□□ -1.84
SIX3O95343 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SIX3O95343 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
SIX3O95343 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
SIX3O95343 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SIX3O95343 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
SIX3O95343 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SIX3O95343 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX3O95343 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SIX3O95343 RPL23AP57-201ENST00000332361 466 ntBASIC3.58□□□□□ -1.84
SIX3O95343 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SIX3O95343 Y_RNA.500-201ENST00000384466 111 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AP000567.1-201ENST00000406413 156 ntBASIC3.58□□□□□ -1.84
SIX3O95343 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.58□□□□□ -1.84
SIX3O95343 SSR1P2-201ENST00000415208 787 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX3O95343 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX3O95343 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX3O95343 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX3O95343 AL591419.1-201ENST00000427423 339 ntBASIC3.58□□□□□ -1.84
SIX3O95343 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX3O95343 ARPC3P5-201ENST00000448802 534 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AC099563.1-201ENST00000456086 418 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.58□□□□□ -1.84
SIX3O95343 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SIX3O95343 VN1R105P-201ENST00000486595 910 ntBASIC3.58□□□□□ -1.84
SIX3O95343 RPS3AP50-201ENST00000487064 803 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX3O95343 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.58□□□□□ -1.84
SIX3O95343 CYCSP30-201ENST00000546447 172 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AL121766.1-201ENST00000547436 487 ntBASIC3.58□□□□□ -1.84
SIX3O95343 SETP7-201ENST00000552169 453 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.58□□□□□ -1.84
SIX3O95343 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.58□□□□□ -1.84
SIX3O95343 AP005205.1-201ENST00000563503 508 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.58□□□□□ -1.84
SIX3O95343 AC037471.2-201ENST00000564941 598 ntBASIC3.58□□□□□ -1.84
SIX3O95343 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.58□□□□□ -1.84
SIX3O95343 AC009101.1-201ENST00000568135 242 ntBASIC3.58□□□□□ -1.84
SIX3O95343 RN7SL703P-201ENST00000578485 302 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX3O95343 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.58□□□□□ -1.84
SIX3O95343 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX3O95343 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX3O95343 AL022099.1-201ENST00000604551 712 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AL450336.1-201ENST00000605180 586 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AL158042.1-201ENST00000605338 460 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AL391497.1-201ENST00000608671 547 ntBASIC3.58□□□□□ -1.84
SIX3O95343 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 162.4 ms