Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC020699.1-201ENST00000505161 445 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.58□□□□□ -1.68
NPHP1O15259 RNU6-311P-201ENST00000516224 102 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 RANP9-201ENST00000519957 271 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
NPHP1O15259 NBEAP1-201ENST00000554452 979 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.58□□□□□ -1.68
NPHP1O15259 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.58□□□□□ -1.68
NPHP1O15259 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.58□□□□□ -1.68
NPHP1O15259 MIR4644-201ENST00000579929 84 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 AL137849.1-201ENST00000604767 169 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 AC080013.3-201ENST00000606839 578 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 AC048347.1-201ENST00000624621 427 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.58□□□□□ -1.68
NPHP1O15259 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
NPHP1O15259 AC006504.1-201ENST00000562493 3666 ntBASIC4.58□□□□□ -1.68
NPHP1O15259 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
NPHP1O15259 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
NPHP1O15259 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
NPHP1O15259 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NPHP1O15259 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
NPHP1O15259 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.57□□□□□ -1.68
NPHP1O15259 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
NPHP1O15259 RNU1-89P-201ENST00000384592 164 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 MIR128-1-201ENST00000384921 82 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 SNORA48.2-201ENST00000390926 124 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.57□□□□□ -1.68
NPHP1O15259 AC099677.1-201ENST00000420575 175 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AC007742.1-201ENST00000425789 329 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.57□□□□□ -1.68
NPHP1O15259 AL590233.1-201ENST00000430017 456 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.57□□□□□ -1.68
NPHP1O15259 ELOCP26-201ENST00000436067 329 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 TPTE2P3-201ENST00000441562 1189 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AL591503.2-201ENST00000442314 1005 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC4.57□□□□□ -1.68
NPHP1O15259 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.57□□□□□ -1.68
NPHP1O15259 AC084198.1-201ENST00000477747 402 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AP000563.1-201ENST00000490865 758 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.57□□□□□ -1.68
NPHP1O15259 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.57□□□□□ -1.68
NPHP1O15259 SNORA70.14-201ENST00000516205 110 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 SNORA70.18-201ENST00000516696 98 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.57□□□□□ -1.68
NPHP1O15259 AC024224.1-201ENST00000538284 609 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.57□□□□□ -1.68
NPHP1O15259 MTND4P33-201ENST00000556706 766 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.57□□□□□ -1.68
NPHP1O15259 MRPS35P3-201ENST00000603189 709 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.57□□□□□ -1.68
NPHP1O15259 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.57□□□□□ -1.68
NPHP1O15259 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.57□□□□□ -1.68
NPHP1O15259 AC079684.1-201ENST00000621405 437 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 SCARNA15.3-201ENST00000626315 122 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 SCARNA4.1-201ENST00000628597 123 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.57□□□□□ -1.68
NPHP1O15259 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.57□□□□□ -1.68
NPHP1O15259 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
NPHP1O15259 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.57□□□□□ -1.68
NPHP1O15259 AC097714.1-201ENST00000511272 1647 ntBASIC4.57□□□□□ -1.68
NPHP1O15259 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
NPHP1O15259 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NPHP1O15259 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
NPHP1O15259 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.56□□□□□ -1.68
NPHP1O15259 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.56□□□□□ -1.68
NPHP1O15259 RPL23AP29-201ENST00000397284 453 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.56□□□□□ -1.68
NPHP1O15259 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.56□□□□□ -1.68
NPHP1O15259 AC019178.2-201ENST00000423595 505 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.56□□□□□ -1.68
NPHP1O15259 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.56□□□□□ -1.68
NPHP1O15259 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
NPHP1O15259 CR769776.1-201ENST00000441254 787 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.56□□□□□ -1.68
NPHP1O15259 AC069499.1-201ENST00000489433 509 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AL024509.2-201ENST00000493462 493 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC068305.1-201ENST00000497406 726 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.56□□□□□ -1.68
NPHP1O15259 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC4.56□□□□□ -1.68
NPHP1O15259 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC4.56□□□□□ -1.68
NPHP1O15259 RN7SKP289-201ENST00000517244 295 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.56□□□□□ -1.68
NPHP1O15259 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
NPHP1O15259 AC018630.1-201ENST00000541376 925 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC009712.1-201ENST00000564938 316 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.56□□□□□ -1.68
NPHP1O15259 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.56□□□□□ -1.68
NPHP1O15259 VN1R78P-201ENST00000597393 564 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC110741.2-201ENST00000605278 268 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC007349.4-201ENST00000608114 532 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
NPHP1O15259 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NPHP1O15259 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC068787.1-201ENST00000623908 691 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.56□□□□□ -1.68
NPHP1O15259 AP000776.1-201ENST00000530032 1663 ntBASIC4.56□□□□□ -1.68
NPHP1O15259 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
NPHP1O15259 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NPHP1O15259 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms