Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SNORA62.3-201ENST00000365110 153 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SET-203ENST00000372688 801 ntTSL 2 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SNORA20.2-201ENST00000383922 131 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL583835.1-201ENST00000399570 407 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL357515.1-201ENST00000402967 542 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPL7P25-201ENST00000404151 721 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU4-26P-201ENST00000410270 107 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.615-201ENST00000410769 117 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-370P-201ENST00000411008 104 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ERLEC1P1-201ENST00000433806 578 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL161722.2-201ENST00000434731 981 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL035666.1-201ENST00000446195 348 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TRGVB-201ENST00000453257 471 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPL7P22-201ENST00000466005 733 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 HMGB1P19-201ENST00000517578 577 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC022616.6-201ENST00000520479 119 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 OR5M2P-201ENST00000529003 936 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 OR4R1P-201ENST00000529879 463 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MIR6716-201ENST00000613413 80 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 OFD1P5Y-201ENST00000447585 2590 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC090220.1-201ENST00000593078 1699 ntBASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC6.64□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC093591.2-201ENST00000565254 3843 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU4-20P-201ENST00000365601 151 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-1013P-201ENST00000384180 107 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.574-201ENST00000384766 95 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNA5SP105-201ENST00000391123 113 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL591416.1-201ENST00000404015 867 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 BTBD10P2-201ENST00000404779 676 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 UQCRBP1-201ENST00000421129 336 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC009238.2-201ENST00000431026 355 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC073415.1-201ENST00000449240 153 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC107399.1-201ENST00000451226 265 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC006967.1-201ENST00000467608 589 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL163973.1-201ENST00000484753 577 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-976P-201ENST00000516086 111 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-201P-201ENST00000517100 61 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CYCSP29-201ENST00000533731 318 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 POLR2KP1-201ENST00000553226 168 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MTCO3P23-201ENST00000561363 289 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC023575.1-201ENST00000580510 358 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MIR6075-201ENST00000620782 95 ntBASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 CDY11P-201ENST00000447168 1651 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SAMMSON-210ENST00000641260 1308 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AL157777.2-201ENST00000258070 137 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SNRPEP3-201ENST00000338402 276 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU5E-1-201ENST00000362477 120 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNA5SP428-201ENST00000365129 132 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 Y_RNA.339-201ENST00000365325 102 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6-1032P-201ENST00000384100 107 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 MIR548M-201ENST00000408260 86 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU6ATAC23P-201ENST00000408448 123 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 RNU2-64P-201ENST00000411315 191 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 SDAD1P3-201ENST00000427380 333 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 AC096644.2-201ENST00000429278 159 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 GPR143P-201ENST00000434155 205 ntBASIC6.62□□□□□ -1.35
SENP3-EIF4A1A0A087X0R7 UBE2V1P5-201ENST00000440070 405 ntBASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms