Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC244517.12-201ENST00000623581 663 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 ATM-230ENST00000640388 578 ntTSL 5 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 OFD1P9Y-201ENST00000417699 1491 ntBASIC6.28□□□□□ -1.4
CHMP3Q9Y3E7 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 OR1S2-201ENST00000302592 978 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 Y_RNA.100-201ENST00000363141 102 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AL024474.1-201ENST00000404655 591 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC005517.2-201ENST00000424673 553 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 TIMM9P1-201ENST00000436122 256 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 PRPS1P1-201ENST00000445305 876 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 RNU7-152P-201ENST00000458982 64 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 Y_RNA.635-201ENST00000459041 101 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC092436.1-201ENST00000506450 503 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 MRPS33P2-201ENST00000507850 322 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 Y_RNA.682-201ENST00000516457 100 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 RNU6-1137P-201ENST00000517073 99 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 MGST1-215ENST00000540056 546 ntTSL 3 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 NCAPGP2-201ENST00000557911 754 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC018552.3-201ENST00000567416 561 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC068790.3-201ENST00000602988 553 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 XIAPP1-201ENST00000603162 600 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 uc_338.12-201ENST00000616344 181 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC006484.1-201ENST00000435086 1884 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 AC002525.1-201ENST00000624392 1622 ntBASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CHMP3Q9Y3E7 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AC004972.1-201ENST00000623934 2209 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 SAMMSON-213ENST00000641336 1521 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 GNAS-202ENST00000306090 477 ntTSL 5 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 Y_RNA.234-201ENST00000364409 97 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 Y_RNA.339-201ENST00000365325 102 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 RNY3P13-201ENST00000365542 102 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 MTCYBP4-201ENST00000401524 249 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 MIR548F5-201ENST00000408421 86 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AL590609.2-201ENST00000421430 368 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AC009238.2-201ENST00000431026 355 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 CEACAMP9-201ENST00000442990 513 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 RNU7-66P-201ENST00000459469 62 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 RPL7L1P8-201ENST00000469911 741 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 MTCO1P29-201ENST00000496868 288 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 PTP4A1P4-201ENST00000512479 322 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AC093303.1-201ENST00000514549 295 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 RNU6-1038P-201ENST00000516516 104 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 Y_RNA.720-201ENST00000517166 92 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 APOOP3-201ENST00000536787 586 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AC024224.1-201ENST00000538284 609 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AC018630.1-201ENST00000541376 925 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AL118558.2-201ENST00000556294 238 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AC022884.2-201ENST00000578535 580 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 VN1R107P-201ENST00000601784 209 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AL355816.1-201ENST00000607951 118 ntBASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC6.26□□□□□ -1.41
CHMP3Q9Y3E7 AL049794.2-201ENST00000616301 365 ntBASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms