Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 snoU109.4-201ENST00000458953 143 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 OR5H5P-201ENST00000503164 928 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AK3P4-201ENST00000504283 583 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC025465.4-201ENST00000513422 638 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC093249.4-201ENST00000564755 259 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 HNRNPCP4-201ENST00000571636 900 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AL512782.1-201ENST00000603093 364 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC020910.3-201ENST00000603701 874 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AL161637.1-201ENST00000622380 412 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.27□□□□□ -1.73
VSX1Q9NZR4 AC139713.2-215ENST00000641428 5037 ntBASIC4.27□□□□□ -1.73
VSX1Q9NZR4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 ZNF33CP-201ENST00000432492 2030 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 RN7SKP95-201ENST00000362860 303 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 RNY3P3-201ENST00000363816 102 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 RNU6-908P-201ENST00000410160 94 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 EIF1P3-201ENST00000423841 334 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 TDGF1P1-201ENST00000445734 527 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 DDX3P2-201ENST00000446138 111 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC073850.1-201ENST00000449243 255 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC140076.1-201ENST00000449897 361 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 BX276092.4-201ENST00000452056 248 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AL121877.1-201ENST00000453704 622 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 RAD23BP3-201ENST00000454157 1152 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC104308.1-201ENST00000454621 333 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC063943.1-201ENST00000465434 453 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC008628.2-201ENST00000502605 298 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 LRRC34P2-201ENST00000514850 553 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 RNU6-410P-201ENST00000517006 107 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AP003497.1-201ENST00000528472 562 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 OR4R1P-201ENST00000529879 463 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 OR4T1P-201ENST00000554933 911 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AL109766.1-201ENST00000555080 552 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC079075.1-201ENST00000559543 878 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC073091.2-201ENST00000603205 907 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC025588.3-201ENST00000604182 274 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 AC012150.2-201ENST00000621300 544 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 MIR6719-201ENST00000622428 87 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 MIR3662-201ENST00000637030 95 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 PABPC1P7-201ENST00000413177 1513 ntBASIC4.26□□□□□ -1.73
VSX1Q9NZR4 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.26□□□□□ -1.73
VSX1Q9NZR4 NXPH1-205ENST00000602349 1953 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AL592437.2-201ENST00000421655 2434 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 NMD3P1-201ENST00000439704 1488 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 AL049555.1-201ENST00000562834 1933 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 RNA5SP305-201ENST00000362665 119 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 Y_RNA.160-201ENST00000363677 92 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 SNORD51-201ENST00000384320 80 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 RNU6-278P-201ENST00000390945 109 ntBASIC4.25□□□□□ -1.73
VSX1Q9NZR4 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VSX1Q9NZR4 JKAMPP1-201ENST00000413804 919 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms