Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 OSTCP5-201ENST00000425293 453 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AC140076.1-201ENST00000449897 361 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 snoU13.8-201ENST00000458890 104 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 ACTG1P13-201ENST00000486987 1043 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 RPL21P129-201ENST00000491732 478 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AP001207.2-201ENST00000519490 539 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 OR7E13P-201ENST00000526052 910 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 OR4T1P-201ENST00000554933 911 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 HMGB1P14-201ENST00000557424 591 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 SNORA62.6-201ENST00000606322 83 ntBASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CHMP4AQ9BY43 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 MTCO1P9-201ENST00000505577 1534 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 SNORA62.3-201ENST00000365110 153 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 RNA5SP306-201ENST00000411087 107 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC024082.2-201ENST00000434771 238 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 NDUFB4P6-201ENST00000436819 366 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC005297.2-201ENST00000450430 606 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 RPL18AP17-201ENST00000455326 198 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 SNORD105B-201ENST00000458770 79 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC091564.1-201ENST00000464563 479 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 SETP14-201ENST00000497538 873 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 MTND4LP22-201ENST00000508209 276 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 VN1R78P-201ENST00000597393 564 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AL031985.2-201ENST00000600955 480 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC245389.1-201ENST00000605141 529 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AF129408.1-201ENST00000608767 431 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AL138960.2-201ENST00000625145 535 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 AC090897.3-201ENST00000636973 1157 ntBASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
CHMP4AQ9BY43 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.64
CHMP4AQ9BY43 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.64
CHMP4AQ9BY43 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CHMP4AQ9BY43 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 RNA5SP139-201ENST00000364340 117 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 SNORA48.8-201ENST00000391324 134 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 SOD2P1-201ENST00000396543 562 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 RN7SKP27-201ENST00000410684 333 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 SSXP9-201ENST00000417503 292 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 RN7SL542P-201ENST00000467147 294 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 RPL30P5-201ENST00000494923 336 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AC096571.1-202ENST00000506634 735 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 CBX3P3-201ENST00000508108 532 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 RN7SKP209-201ENST00000516888 304 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 RNU1-45P-201ENST00000517191 141 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AC023632.4-201ENST00000517783 191 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AC022695.1-201ENST00000522089 237 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AL132657.2-201ENST00000564417 358 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AC105224.1-201ENST00000587055 421 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 RNU1-30P-201ENST00000606575 163 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AP000254.1-201ENST00000609934 520 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 AL161637.1-201ENST00000622380 412 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 LINC02211-204ENST00000642024 1070 ntBASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.83□□□□□ -1.64
CHMP4AQ9BY43 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 NACA3P-201ENST00000359690 648 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 RNU6-359P-201ENST00000365466 108 ntBASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CHMP4AQ9BY43 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 138.4 ms