Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 EI24P2-201ENST00000397776 1076 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 RPS29P4-201ENST00000414733 161 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC245052.5-201ENST00000416320 649 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP28Q96RU2 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 GOT2P5-201ENST00000433995 546 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 GTF2IP7-202ENST00000436677 309 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP28Q96RU2 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.71□□□□□ -1.82
USP28Q96RU2 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.71□□□□□ -1.82
USP28Q96RU2 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP28Q96RU2 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.71□□□□□ -1.82
USP28Q96RU2 DYNLL1P6-201ENST00000503440 264 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC023632.4-201ENST00000517783 191 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC068657.1-201ENST00000520807 306 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AF279873.1-201ENST00000523393 313 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AL389895.1-201ENST00000554127 252 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AC090695.1-201ENST00000561269 1222 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.71□□□□□ -1.82
USP28Q96RU2 MIR3912-201ENST00000577566 105 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 BPTFP1-201ENST00000579209 492 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 MIR4276-201ENST00000584832 70 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AC093227.2-201ENST00000589357 285 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AL450489.1-201ENST00000612071 468 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AL157770.1-201ENST00000623049 439 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC091903.1-201ENST00000624322 454 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 AC107081.3-201ENST00000612715 2034 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.71□□□□□ -1.82
USP28Q96RU2 MTND5P24-201ENST00000438892 1767 ntBASIC3.71□□□□□ -1.82
USP28Q96RU2 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.7□□□□□ -1.82
USP28Q96RU2 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP28Q96RU2 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP28Q96RU2 MIR148B-201ENST00000362252 99 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 RNU6-600P-201ENST00000362524 99 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 Y_RNA.126-201ENST00000363382 111 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 MIR217-201ENST00000384817 110 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AC119751.3-201ENST00000399720 670 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 RNU6-272P-201ENST00000411028 104 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 HMGN1P24-201ENST00000412282 298 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 RPL31P2-201ENST00000413849 377 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AC063979.1-201ENST00000415539 377 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.7□□□□□ -1.82
USP28Q96RU2 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.7□□□□□ -1.82
USP28Q96RU2 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 HMGN2P31-201ENST00000432430 273 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 AC093155.1-201ENST00000440164 826 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.7□□□□□ -1.82
USP28Q96RU2 AC007327.1-201ENST00000447461 264 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AL359073.1-201ENST00000448036 403 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.7□□□□□ -1.82
USP28Q96RU2 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.7□□□□□ -1.82
USP28Q96RU2 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
USP28Q96RU2 AC114967.1-201ENST00000504890 259 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AC008885.2-201ENST00000509506 930 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.7□□□□□ -1.82
USP28Q96RU2 TXNP6-201ENST00000510190 310 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 RNA5SP217-201ENST00000515959 91 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 MTCO1P49-201ENST00000523429 802 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.7□□□□□ -1.82
USP28Q96RU2 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.7□□□□□ -1.82
USP28Q96RU2 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.7□□□□□ -1.82
USP28Q96RU2 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
USP28Q96RU2 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 MIR2682-201ENST00000580305 110 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 AC091488.1-201ENST00000604239 660 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 U3.45-201ENST00000607547 219 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 AP004247.3-201ENST00000608682 624 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 TUSC7.1-201ENST00000610969 165 ntBASIC3.7□□□□□ -1.82
USP28Q96RU2 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.7□□□□□ -1.82
USP28Q96RU2 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.7□□□□□ -1.82
USP28Q96RU2 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP28Q96RU2 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP28Q96RU2 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
USP28Q96RU2 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.69□□□□□ -1.82
USP28Q96RU2 AL161912.2-201ENST00000565707 3007 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP28Q96RU2 AL512646.1-201ENST00000269395 1077 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 U3.11-201ENST00000364476 212 ntBASIC3.69□□□□□ -1.82
USP28Q96RU2 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms