Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 RPL21P10-201ENST00000463521 490 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 KLRA1P-201ENST00000503499 986 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC004062.1-201ENST00000509926 645 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 AP003102.1-201ENST00000525638 661 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 AP001189.2-201ENST00000527320 189 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC126177.3-201ENST00000551839 688 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 OR4H12P-201ENST00000556269 907 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS35Q96QK1 DNAJC19P3-201ENST00000594491 331 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC069200.1-201ENST00000609511 323 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 SNORD39.4-201ENST00000620099 78 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 AP003485.1-201ENST00000625093 753 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 AC106858.1-201ENST00000637497 429 ntBASIC3.32□□□□□ -1.88
VPS35Q96QK1 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
VPS35Q96QK1 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.32□□□□□ -1.88
VPS35Q96QK1 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
VPS35Q96QK1 MTCO1P23-201ENST00000415223 1526 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 RNU6-805P-201ENST00000365643 106 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 RNA5SP129-201ENST00000410276 118 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 RNU6-55P-201ENST00000411092 107 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 RNU6-954P-201ENST00000411355 107 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS35Q96QK1 LUZP4P1-201ENST00000415420 344 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 MTND4P3-201ENST00000417829 541 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC012065.2-201ENST00000421295 375 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 SEPT7P5-201ENST00000434048 306 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC093155.1-201ENST00000440164 826 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 ATP5C1P1-201ENST00000441945 895 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC125238.1-201ENST00000448842 249 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC079776.3-201ENST00000450665 370 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 SLC31A1P1-201ENST00000451221 567 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC087312.1-201ENST00000471411 480 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC112206.4-201ENST00000515142 405 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 RNU6-27P-201ENST00000516146 107 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 RPL12P22-201ENST00000519073 490 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 OR4P1P-201ENST00000530808 1136 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 EEF1B2P4-201ENST00000551398 348 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC010975.3-201ENST00000618727 978 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC092650.2-201ENST00000619984 902 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 AC244100.1-202ENST00000621554 382 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 CYP3A51P-201ENST00000633513 256 ntBASIC3.31□□□□□ -1.88
VPS35Q96QK1 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS35Q96QK1 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
VPS35Q96QK1 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS35Q96QK1 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
VPS35Q96QK1 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 AL049780.3-201ENST00000624612 1583 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS35Q96QK1 RNA5SP267-201ENST00000364893 126 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 DEFB109C-201ENST00000382575 264 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 DEFB109B-201ENST00000382656 264 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 MIR34B-201ENST00000385076 84 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 ARF4P3-201ENST00000397387 509 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 RPL23AP47-201ENST00000408017 460 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 BX323014.1-201ENST00000412876 237 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 NDUFB4P5-201ENST00000415445 361 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AL356968.1-201ENST00000416622 474 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS35Q96QK1 RPF2P1-201ENST00000424137 906 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 OR2B8P-201ENST00000432841 938 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS35Q96QK1 MTND2P19-201ENST00000449129 1012 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 PRSS3P4-201ENST00000453323 162 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 NECAP1P2-201ENST00000455668 727 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS35Q96QK1 BTF3P5-201ENST00000457252 467 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 snoU13.4-201ENST00000458916 104 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AC010401.1-201ENST00000463867 348 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 AL049829.1-201ENST00000465411 156 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 HMGB1P25-201ENST00000468402 607 ntBASIC3.3□□□□□ -1.88
VPS35Q96QK1 POU5F1P7-201ENST00000508759 541 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms