Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LY96-202ENST00000518893 430 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 CKS1BP7-201ENST00000522230 235 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 AC125611.2-201ENST00000551907 647 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 AC103881.1-201ENST00000603476 538 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC42Q96M95 SNHG22-203ENST00000617833 660 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 AC010297.1-201ENST00000623948 149 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 AC024023.1-201ENST00000624530 922 ntBASIC2.78□□□□□ -1.96
CCDC42Q96M95 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC42Q96M95 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC42Q96M95 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC42Q96M95 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC42Q96M95 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 AL356057.3-201ENST00000402607 340 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 RNA5SP181-201ENST00000410246 98 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 RPLP0P7-201ENST00000416050 667 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 SNRPEP4-201ENST00000435815 279 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 AL135938.1-201ENST00000443141 297 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 AL358232.1-201ENST00000448030 501 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 GAPDHP39-201ENST00000481866 979 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 RNA5SP282-201ENST00000516355 108 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 OR5BN1P-201ENST00000532955 829 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC42Q96M95 MIR4446-201ENST00000578505 67 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 AC008962.1-201ENST00000605729 304 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 FO624990.1-201ENST00000636373 85 ntBASIC2.77□□□□□ -1.97
CCDC42Q96M95 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC42Q96M95 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC42Q96M95 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC42Q96M95 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC42Q96M95 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC42Q96M95 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC42Q96M95 MIR9-1-201ENST00000385198 89 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 ARF4P3-201ENST00000397387 509 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC42Q96M95 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC42Q96M95 RSL24D1P3-201ENST00000449255 495 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 AC008280.2-201ENST00000455473 307 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC42Q96M95 AP002345.1-201ENST00000456493 928 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 RPS23P3-201ENST00000470993 430 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 SEM1P1-201ENST00000506694 209 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 AC105914.1-201ENST00000511798 226 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 SNORA31.1-201ENST00000515993 133 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 SNORA31.5-201ENST00000516190 133 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 AC079600.2-201ENST00000550076 130 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC42Q96M95 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC42Q96M95 MIR4325-201ENST00000583049 90 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 AP001029.3-201ENST00000588063 596 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 AC093732.2-201ENST00000607950 274 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC42Q96M95 AP003122.6-201ENST00000623831 495 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC42Q96M95 AC233263.6-201ENST00000631132 1963 ntBASIC2.76□□□□□ -1.97
CCDC42Q96M95 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
CCDC42Q96M95 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC42Q96M95 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 RNU1-85P-201ENST00000364127 164 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC42Q96M95 FO393413.1-201ENST00000402892 195 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 MIR1303-201ENST00000408625 86 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 MIR1289-1-201ENST00000408836 144 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 UBE2V1P6-201ENST00000430840 422 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 RPS24P13-201ENST00000442520 397 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC044797.1-201ENST00000445744 679 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC104978.1-201ENST00000449387 391 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC133134.1-201ENST00000466800 359 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 KC877373.1-201ENST00000479066 408 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 AP003102.1-201ENST00000525638 661 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC022690.1-201ENST00000526681 550 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 MTCYBP28-201ENST00000566728 1132 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 AL049779.4-201ENST00000604500 156 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC2.75□□□□□ -1.97
CCDC42Q96M95 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC42Q96M95 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC42Q96M95 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
CCDC42Q96M95 AL672167.1-206ENST00000356293 943 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms