Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 HMGN3P1-201ENST00000453847 193 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 BTF3P5-201ENST00000457252 467 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC103987.1-201ENST00000473394 348 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC104619.4-201ENST00000510773 249 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 RNA5SP468-201ENST00000516782 93 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC245166.1-201ENST00000521012 253 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 SULT1C2P1-202ENST00000562418 459 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AL669831.4-202ENST00000590817 238 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AP001542.2-201ENST00000593141 364 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC078899.3-201ENST00000599065 212 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC113368.1-201ENST00000603736 382 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC068722.2-201ENST00000618734 544 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AC090617.7-201ENST00000623952 126 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AP003476.1-201ENST00000623984 516 ntBASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC54Q8NEL0 ZNF285B-201ENST00000561698 1767 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 ZNF734P-201ENST00000419494 1534 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 RNU5E-10P-201ENST00000363506 118 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 SUGT1P1-201ENST00000379514 476 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 SNORA51.6-201ENST00000384151 125 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 Y_RNA.472-201ENST00000384322 102 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC016769.3-201ENST00000396562 315 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 MTND4LP20-201ENST00000402379 270 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AL591034.1-201ENST00000407447 340 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC007899.1-201ENST00000412776 775 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 BX842559.1-201ENST00000419615 532 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 GTF2IP3-201ENST00000433887 494 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 GTF2IP7-202ENST00000436677 309 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 ZNF736P11Y-201ENST00000442535 1213 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 ZNF736P12Y-201ENST00000443152 1243 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 RPS24P6-201ENST00000452670 400 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 HMGB1P15-201ENST00000453854 435 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 ZNF736P4Y-201ENST00000454995 1243 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC096571.1-202ENST00000506634 735 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 MTND4LP31-201ENST00000514859 294 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 RN7SKP31-201ENST00000516354 278 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC090502.2-201ENST00000549267 280 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AL157394.1-201ENST00000562983 1224 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC093519.1-201ENST00000566109 298 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 MIR5708-201ENST00000579723 85 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC091057.3-201ENST00000602684 733 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 GAS5-AS1-201ENST00000602767 694 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AL009028.1-201ENST00000604895 802 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AP001521.1-201ENST00000609150 300 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC131902.3-201ENST00000611767 581 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC008083.4-201ENST00000615076 444 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC231759.1-201ENST00000616455 597 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC068831.7-201ENST00000616954 363 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC127502.3-201ENST00000636170 1206 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AC087821.2-201ENST00000637086 450 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 AL392088.2-201ENST00000637607 285 ntBASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC54Q8NEL0 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC54Q8NEL0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.84□□□□□ -1.96
CCDC54Q8NEL0 AP005901.5-201ENST00000545779 1796 ntBASIC2.84□□□□□ -1.96
CCDC54Q8NEL0 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC54Q8NEL0 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC54Q8NEL0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 AC008264.2-201ENST00000610193 3731 ntBASIC2.83□□□□□ -1.96
CCDC54Q8NEL0 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms