Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AP000790.1-201ENST00000528891 737 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 DYNLL1P4-201ENST00000549314 266 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AL157394.1-201ENST00000562983 1224 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC009852.2-201ENST00000567898 485 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC135507.2-201ENST00000612443 309 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC009268.2-201ENST00000621925 457 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 TCP11X1-202ENST00000622971 1372 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 CASC19-204ENST00000641001 2055 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AL031595.2-201ENST00000624215 19071 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 SNORA63-201ENST00000363450 132 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 Y_RNA.460-201ENST00000384255 102 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 RNU6-878P-201ENST00000384578 110 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 MIR1911-201ENST00000410783 80 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 RNU2-6P-201ENST00000411404 190 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC007390.1-201ENST00000415722 356 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 SNRPEP10-201ENST00000420249 274 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 SDCBPP2-201ENST00000424643 885 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 FTLP19-201ENST00000433300 394 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 MTND1P18-201ENST00000448191 573 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 RPL23AP81-201ENST00000455252 467 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC006390.1-201ENST00000508068 283 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 PANCR-202ENST00000513690 448 ntTSL 2 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AF279873.1-201ENST00000523393 313 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AP003122.4-201ENST00000530980 758 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 LSM3P2-201ENST00000551246 273 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC022655.2-201ENST00000577280 318 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC053481.3-201ENST00000577881 843 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 MIR4637-201ENST00000582405 84 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 HMGN1P30-201ENST00000589286 268 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 AL162413.1-201ENST00000603198 110 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 OR11H5P-202ENST00000641612 1325 ntBASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USHBP1Q8N6Y0 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 GNG5P1-201ENST00000255500 204 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RNU6-769P-201ENST00000384407 104 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RNU4-6P-201ENST00000410804 122 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RPL23AP25-201ENST00000430973 463 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AL445584.1-201ENST00000431451 330 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 PPIAP13-201ENST00000434706 478 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RPL12P18-201ENST00000437175 325 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RPL22P17-201ENST00000438729 315 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 HMGB3P12-201ENST00000438745 556 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 CBX1P4-201ENST00000439415 457 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RPL17P49-201ENST00000443728 411 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 MTND4P19-201ENST00000446659 478 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 BTF3P5-201ENST00000457252 467 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RPL21P71-201ENST00000465598 459 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 RPL23AP12-201ENST00000467573 473 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 FAM172BP-201ENST00000487497 1089 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 MIR4795-201ENST00000584182 89 ntBASIC5.6□□□□□ -1.51
USHBP1Q8N6Y0 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 227.2 ms