Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AP001157.1-201ENST00000550837 2339 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 THAP12P4-201ENST00000528321 2266 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 CDY11P-201ENST00000447168 1651 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC005725.1-201ENST00000577346 2607 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AL161781.1-201ENST00000354277 403 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RNU1-59P-201ENST00000364829 162 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RNU6-1325P-201ENST00000364905 105 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RNU6-1151P-201ENST00000384684 107 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 MIR223-201ENST00000385204 110 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AL080315.1-201ENST00000406055 466 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RPL7L1P9-201ENST00000431298 745 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 H3F3BP1-201ENST00000440551 403 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 CYCSP34-201ENST00000458172 304 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RNU1-88P-201ENST00000459274 128 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RPL23AP12-201ENST00000467573 473 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC093267.1-201ENST00000489176 961 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC140059.1-201ENST00000489238 361 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC231760.1-201ENST00000498002 260 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RN7SKP67-201ENST00000515905 235 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RNU6-1069P-201ENST00000516612 133 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RNU7-4P-201ENST00000516961 62 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC090751.1-201ENST00000566966 267 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 U1.25-201ENST00000614085 162 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC090607.5-201ENST00000615692 224 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AL590240.4-201ENST00000616908 390 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 U1.34-201ENST00000618578 162 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 U1.31-201ENST00000620022 160 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AL161637.1-201ENST00000622380 412 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AC132068.1-201ENST00000623805 459 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 AP004607.3-201ENST00000530354 3915 ntBASIC5.92□□□□□ -1.46
NPAS3Q8IXF0 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 AL606537.1-201ENST00000607258 2011 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 Y_RNA.343-201ENST00000365354 112 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 RNU6-1127P-201ENST00000384580 107 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 RNU6-131P-201ENST00000391144 107 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 EIF5P1-201ENST00000400019 1231 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 RNU4-46P-201ENST00000410818 138 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 RNU6-293P-201ENST00000411259 106 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 RPS27P18-201ENST00000431701 247 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 ELOCP18-201ENST00000434209 337 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 RPL23AP31-201ENST00000456160 467 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 RPL36AP13-201ENST00000457490 317 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 RN7SL329P-201ENST00000467740 299 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 AC117503.1-201ENST00000472241 394 ntBASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.91□□□□□ -1.46
NPAS3Q8IXF0 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 141.3 ms