Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 Y_RNA.159-201ENST00000363674 87 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 UBBP2-201ENST00000376781 231 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 RNU6-738P-201ENST00000384531 106 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 SNORD115.1-201ENST00000391109 76 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
USP39Q53GS9 RNA5SP118-201ENST00000410385 109 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AL359704.1-201ENST00000411586 781 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.73□□□□□ -1.65
USP39Q53GS9 VN1R36P-201ENST00000414936 291 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 EIF4HP2-201ENST00000424380 563 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 CKS1BP6-201ENST00000424932 240 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AL589872.1-201ENST00000426602 288 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC073069.1-201ENST00000428657 441 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 RPL34P6-201ENST00000432390 345 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AL031584.1-201ENST00000447169 754 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 MTCO1P27-201ENST00000448269 226 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC140076.1-201ENST00000449897 361 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC005229.2-201ENST00000456995 399 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 BTF3P5-201ENST00000457252 467 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 RPL23AP24-201ENST00000458203 385 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AL591473.1-201ENST00000464297 313 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC020890.1-201ENST00000491837 504 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC093278.1-201ENST00000494700 600 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC026427.2-201ENST00000506228 536 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 POU5F1P7-201ENST00000508759 541 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC007016.1-201ENST00000512110 244 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC006499.2-201ENST00000513470 337 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 RNU6-277P-201ENST00000516272 106 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC105029.1-201ENST00000520250 669 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AL121821.2-201ENST00000556081 394 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AC007224.1-201ENST00000564410 144 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AL355375.2-201ENST00000574825 175 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 NRBF2P1-201ENST00000587407 859 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC022916.3-201ENST00000592961 742 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC245014.2-201ENST00000603689 287 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC007621.1-201ENST00000604544 437 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC246785.4-201ENST00000605374 287 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.73□□□□□ -1.65
USP39Q53GS9 MIR8069-1-201ENST00000616627 86 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC010205.1-201ENST00000616668 449 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 AC022106.2-201ENST00000620114 757 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 MIR8069-2-201ENST00000621412 86 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
USP39Q53GS9 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
USP39Q53GS9 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.73□□□□□ -1.65
USP39Q53GS9 RAD17P1-201ENST00000418130 2042 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AC025031.4-201ENST00000621248 3271 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.72□□□□□ -1.65
USP39Q53GS9 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.72□□□□□ -1.65
USP39Q53GS9 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 ZFRP1-201ENST00000457579 2970 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 DHX9P1-201ENST00000436565 3076 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AP001642.1-201ENST00000624727 2117 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
USP39Q53GS9 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
USP39Q53GS9 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 OR11H4-201ENST00000315409 1082 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.72□□□□□ -1.65
USP39Q53GS9 RNU6-282P-201ENST00000365357 103 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 TMSB4XP8-201ENST00000402089 135 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AL359643.1-201ENST00000404109 423 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 MIR1271-201ENST00000408537 86 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 OR9R1P-201ENST00000412200 877 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.72□□□□□ -1.65
USP39Q53GS9 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.72□□□□□ -1.65
USP39Q53GS9 TMSB4XP6-201ENST00000415187 135 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 MTND3P17-201ENST00000416968 344 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 RAD23BP1-201ENST00000421404 1227 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 TMSB4XP1-201ENST00000424567 135 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP39Q53GS9 RPS27AP12-201ENST00000429552 465 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 AC018644.1-201ENST00000429934 551 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 LSM1P1-201ENST00000438629 273 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 ARPC3P5-201ENST00000448802 534 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.72□□□□□ -1.65
USP39Q53GS9 NF1P3-201ENST00000457709 450 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 RNU7-27P-201ENST00000459281 62 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 MEMO1P3-201ENST00000459811 302 ntBASIC4.72□□□□□ -1.65
USP39Q53GS9 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms