Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 RPL21P10-201ENST00000463521 490 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC013828.1-201ENST00000481845 158 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 RN7SL283P-201ENST00000489055 303 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 POU5F1P7-201ENST00000508759 541 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 SCARNA20.6-201ENST00000517251 106 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 NDUFS5P6-201ENST00000529136 295 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC091946.2-201ENST00000606105 291 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AL157817.1-201ENST00000614264 790 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC018755.4-201ENST00000619715 454 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC109454.4-201ENST00000623411 649 ntBASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC40Q4G0X9 AC244517.1-201ENST00000606030 2086 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AL079305.1-201ENST00000623159 3008 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AL645568.2-201ENST00000432815 1337 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 SUGT1P1-201ENST00000379514 476 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 MIR490-201ENST00000384865 128 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AL079342.2-201ENST00000403367 482 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AL591034.1-201ENST00000407447 340 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 RNU2-28P-201ENST00000410457 189 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 RNA5SP229-201ENST00000410809 99 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC006960.1-201ENST00000419980 153 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 RPL17P49-201ENST00000443728 411 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 MTCYBP42-201ENST00000444653 1130 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 SNORA84-201ENST00000459229 133 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC021678.1-201ENST00000505195 936 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 RNA5SP217-201ENST00000515959 91 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 RNU1-143P-201ENST00000516296 146 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC092354.2-201ENST00000607786 514 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 U1.23-201ENST00000610293 146 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 RNU1-68P-201ENST00000615382 146 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 U1.39-201ENST00000621562 146 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AL138955.1-201ENST00000622881 1040 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 MFSD8-245ENST00000641743 948 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 Z83843.1-201ENST00000604070 3685 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 AC093908.1-201ENST00000623125 8092 ntBASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC40Q4G0X9 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 ANKRD36P1-201ENST00000344424 659 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 RNA5SP119-201ENST00000362715 117 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 RNU6-1257P-201ENST00000384625 110 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 RNU6-712P-201ENST00000410558 100 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 RPL32P35-201ENST00000415214 394 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 PDSS1P2-201ENST00000449397 678 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 HMGB1P25-201ENST00000468402 607 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 RPL21P13-201ENST00000488305 481 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 RNU6-1028P-201ENST00000517164 93 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC027309.2-201ENST00000520566 192 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC245166.1-201ENST00000521012 253 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC008127.2-201ENST00000549925 1075 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 HIGD1AP1-201ENST00000550979 275 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC126177.3-201ENST00000551839 688 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC011611.1-201ENST00000552179 197 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 OR4T1P-201ENST00000554933 911 ntBASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC40Q4G0X9 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms