Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP001521.1-201ENST00000609150 300 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 MTND5P6-201ENST00000422338 1798 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 MIR124-3-201ENST00000384866 87 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 SNORD88.1-201ENST00000408684 91 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 RN7SKP140-201ENST00000411196 284 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 MUPP-201ENST00000438111 566 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AC132942.1-201ENST00000486753 483 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 RN7SKP282-201ENST00000516824 299 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AP001207.1-201ENST00000524051 481 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AP004247.3-201ENST00000608682 624 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 C2orf27A-204ENST00000623058 969 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AC080128.1-201ENST00000474389 1917 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 RPL7P52-201ENST00000449200 742 ntBASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 HMGB3P21-201ENST00000452483 547 ntBASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 AC008571.1-201ENST00000467232 300 ntBASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 TRBV1-201ENST00000476502 284 ntBASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 AC104090.1-201ENST00000506341 1171 ntBASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 AC091488.1-201ENST00000604239 660 ntBASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 ADAM3A-203ENST00000461344 2157 ntBASIC2.93□□□□□ -1.94
CCDC88AQ3V6T2 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 SNORA41-201ENST00000384675 132 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 VN1R17P-201ENST00000472048 1090 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 FAM92A1P2-202ENST00000504766 877 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 RNU6-548P-201ENST00000517083 115 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AC007536.1-201ENST00000533382 349 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AC074029.1-201ENST00000552531 1044 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AC084757.1-201ENST00000559987 490 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 MIR4716-201ENST00000579628 84 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 PSMA6P4-201ENST00000603247 718 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 XIST_intron.1-201ENST00000619444 68 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AC084035.1-201ENST00000634543 607 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AC091152.2-201ENST00000591628 2569 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 RNA5SP213-201ENST00000391031 106 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AC107081.1-201ENST00000414975 361 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AC010265.1-201ENST00000513509 211 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AC046143.2-201ENST00000609789 160 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 AL136981.2-201ENST00000617319 734 ntBASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC88AQ3V6T2 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 U8.13-201ENST00000390842 128 ntBASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 AL049830.2-201ENST00000480072 201 ntBASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 OR4U1P-201ENST00000554958 912 ntBASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 AP000942.3-201ENST00000603702 160 ntBASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 AC099778.2-201ENST00000610904 211 ntBASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 AC145207.9-201ENST00000623802 325 ntBASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 AL353746.1-201ENST00000566293 6881 ntBASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC88AQ3V6T2 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 AL121882.1-201ENST00000422893 417 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 RPS24P8-201ENST00000431490 402 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 AP001086.1-201ENST00000494882 321 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 IGHV3-76-201ENST00000522465 295 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 OR5BN1P-201ENST00000532955 829 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 GNAI2P1-201ENST00000541815 315 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 AC061975.8-201ENST00000587058 721 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 AC073348.1-201ENST00000623002 331 ntBASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.9□□□□□ -1.94
CCDC88AQ3V6T2 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC88AQ3V6T2 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms