Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC080078.2-201ENST00000603766 501 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC091805.2-201ENST00000603848 235 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AL513477.2-201ENST00000607858 568 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC013476.2-201ENST00000614456 459 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AL445264.1-201ENST00000621719 171 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC019278.1-201ENST00000623516 479 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC024560.2-201ENST00000507981 1497 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA1P49639 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA1P49639 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA1P49639 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA1P49639 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA1P49639 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXA1P49639 RNU1-130P-201ENST00000363930 160 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 RNU4-91P-201ENST00000364778 135 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 RNU6-730P-201ENST00000383954 104 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 RPS3AP36-201ENST00000398190 775 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 RN7SKP266-201ENST00000410232 287 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 MTCO1P17-201ENST00000411522 491 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA1P49639 AL161631.1-201ENST00000417933 486 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA1P49639 AL513174.1-201ENST00000423182 629 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA1P49639 AC008065.1-201ENST00000428525 348 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 BRWD1P3-201ENST00000428816 390 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 AC091862.1-201ENST00000438016 1100 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 TXNP1-201ENST00000441872 371 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA1P49639 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA1P49639 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA1P49639 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA1P49639 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA1P49639 Z82190.1-201ENST00000454534 490 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA1P49639 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA1P49639 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXA1P49639 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA1P49639 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA1P49639 RNU6-720P-201ENST00000516363 108 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 BRD9P1-201ENST00000529855 560 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 ZNF519P3-201ENST00000557158 1032 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA1P49639 MIR3913-1-201ENST00000577744 102 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA1P49639 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA1P49639 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 AC091965.4-201ENST00000607691 587 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA1P49639 AC108747.1-201ENST00000609508 535 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 AL589743.7-201ENST00000612637 233 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 AC015540.1-201ENST00000615828 501 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 XIST_intron.1-201ENST00000619444 68 ntBASIC3.5□□□□□ -1.85
HOXA1P49639 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA1P49639 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA1P49639 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA1P49639 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA1P49639 AP001148.1-201ENST00000624124 2359 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
HOXA1P49639 AP002001.2-201ENST00000529025 1469 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 SAGE2P-201ENST00000420011 2126 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA1P49639 MFSD8-216ENST00000641147 4009 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA1P49639 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
HOXA1P49639 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA1P49639 RNU6-28P-201ENST00000362378 107 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 RNU6-263P-201ENST00000363811 107 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 RNU6-853P-201ENST00000364306 107 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 RNVU1-3-201ENST00000364313 161 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA1P49639 RNU6-1215P-201ENST00000384441 102 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 Y_RNA.516-201ENST00000384541 124 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.49□□□□□ -1.85
HOXA1P49639 METTL5-204ENST00000409340 472 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA1P49639 RN7SKP285-201ENST00000410137 318 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXA1P49639 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXA1P49639 AC011742.1-201ENST00000431448 434 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXA1P49639 AL132765.1-201ENST00000434165 553 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 NANOGNBP1-201ENST00000448444 480 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 PDSS1P2-201ENST00000449397 678 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AL162591.2-201ENST00000449634 317 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXA1P49639 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.49□□□□□ -1.85
HOXA1P49639 MTCO3P20-201ENST00000454926 688 ntBASIC3.49□□□□□ -1.85
HOXA1P49639 KLF3P2-201ENST00000465138 268 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms