Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CDX1P47902 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.32□□□□□ -1.88
CDX1P47902 U1.1-201ENST00000384101 164 ntBASIC3.32□□□□□ -1.88
CDX1P47902 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CDX1P47902 AC097374.1-203ENST00000400783 485 ntBASIC3.32□□□□□ -1.88
CDX1P47902 RNU2-43P-201ENST00000410306 190 ntBASIC3.32□□□□□ -1.88
CDX1P47902 RN7SKP235-201ENST00000410662 305 ntBASIC3.32□□□□□ -1.88
CDX1P47902 MTCO1P17-201ENST00000411522 491 ntBASIC3.32□□□□□ -1.88
CDX1P47902 BX119904.4-201ENST00000424402 301 ntBASIC3.32□□□□□ -1.88
CDX1P47902 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.32□□□□□ -1.88
CDX1P47902 ARF4P2-201ENST00000430209 526 ntBASIC3.32□□□□□ -1.88
CDX1P47902 MTND1P20-201ENST00000430341 950 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.32□□□□□ -1.88
CDX1P47902 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.32□□□□□ -1.88
CDX1P47902 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.32□□□□□ -1.88
CDX1P47902 AC114755.5-201ENST00000447760 831 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.32□□□□□ -1.88
CDX1P47902 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 CEACAMP4-201ENST00000457676 421 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.32□□□□□ -1.88
CDX1P47902 VN1R104P-201ENST00000505115 1009 ntBASIC3.32□□□□□ -1.88
CDX1P47902 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
CDX1P47902 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.32□□□□□ -1.88
CDX1P47902 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.32□□□□□ -1.88
CDX1P47902 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 RNU6-528P-201ENST00000516926 100 ntBASIC3.32□□□□□ -1.88
CDX1P47902 MIR2116-201ENST00000517221 80 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.32□□□□□ -1.88
CDX1P47902 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.32□□□□□ -1.88
CDX1P47902 DUXAP6-201ENST00000553858 601 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AC034268.2-201ENST00000571784 482 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.32□□□□□ -1.88
CDX1P47902 AC022916.3-201ENST00000592961 742 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 AL354984.3-201ENST00000604803 325 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 AC002550.2-201ENST00000621246 394 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 MIR492-201ENST00000638676 116 ntBASIC3.32□□□□□ -1.88
CDX1P47902 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 LARP1BP1-201ENST00000506036 1359 ntBASIC3.32□□□□□ -1.88
CDX1P47902 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.32□□□□□ -1.88
CDX1P47902 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.32□□□□□ -1.88
CDX1P47902 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CDX1P47902 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CDX1P47902 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 AL513185.3-201ENST00000433335 1300 ntBASIC3.31□□□□□ -1.88
CDX1P47902 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AL391994.1-201ENST00000254724 282 ntBASIC3.31□□□□□ -1.88
CDX1P47902 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CDX1P47902 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
CDX1P47902 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 AL356967.1-201ENST00000406305 431 ntBASIC3.31□□□□□ -1.88
CDX1P47902 RN7SKP182-201ENST00000410772 298 ntBASIC3.31□□□□□ -1.88
CDX1P47902 RAP1BP1-201ENST00000412709 553 ntBASIC3.31□□□□□ -1.88
CDX1P47902 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 MFSD13B-201ENST00000420133 1290 ntBASIC3.31□□□□□ -1.88
CDX1P47902 BTF3P10-201ENST00000433415 495 ntBASIC3.31□□□□□ -1.88
CDX1P47902 RPL23AP46-201ENST00000438548 490 ntBASIC3.31□□□□□ -1.88
CDX1P47902 RABEPKP1-201ENST00000440529 1026 ntBASIC3.31□□□□□ -1.88
CDX1P47902 MTCYBP3-201ENST00000445588 1137 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AL606662.1-201ENST00000445763 553 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.31□□□□□ -1.88
CDX1P47902 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.31□□□□□ -1.88
CDX1P47902 RN7SL330P-201ENST00000469709 307 ntBASIC3.31□□□□□ -1.88
CDX1P47902 RPL7P19-201ENST00000469948 618 ntBASIC3.31□□□□□ -1.88
CDX1P47902 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
CDX1P47902 AC072039.1-201ENST00000477611 581 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC004263.1-201ENST00000479327 332 ntBASIC3.31□□□□□ -1.88
CDX1P47902 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.31□□□□□ -1.88
CDX1P47902 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 AC099522.1-202ENST00000514718 367 ntBASIC3.31□□□□□ -1.88
CDX1P47902 RNU6-678P-201ENST00000516832 109 ntBASIC3.31□□□□□ -1.88
CDX1P47902 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.31□□□□□ -1.88
CDX1P47902 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CDX1P47902 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CDX1P47902 AC006064.5-201ENST00000541782 248 ntBASIC3.31□□□□□ -1.88
CDX1P47902 OR7K1P-201ENST00000546439 926 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.31□□□□□ -1.88
CDX1P47902 AL109766.1-201ENST00000555080 552 ntBASIC3.31□□□□□ -1.88
CDX1P47902 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.31□□□□□ -1.88
CDX1P47902 AC025884.1-201ENST00000556034 378 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC007224.1-201ENST00000564410 144 ntBASIC3.31□□□□□ -1.88
CDX1P47902 AC136618.2-201ENST00000575091 400 ntBASIC3.31□□□□□ -1.88
CDX1P47902 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.31□□□□□ -1.88
CDX1P47902 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.31□□□□□ -1.88
CDX1P47902 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms