Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RPP40P2-201ENST00000603596 712 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 RNU4-5P-201ENST00000607255 135 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 AL590282.1-201ENST00000610379 1136 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 MIR486-1-201ENST00000612171 68 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC023158.2-201ENST00000614876 543 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AL158163.2-201ENST00000619110 700 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AL121895.2-201ENST00000619558 447 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC004925.1-201ENST00000624256 2706 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC018555.1-201ENST00000567548 1980 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TNFRSF4P43489 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 CDR1-202ENST00000625883 1485 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MTND4P10-201ENST00000446199 1363 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 Y_RNA.472-201ENST00000384322 102 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 U3.29-201ENST00000391296 212 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL161449.1-201ENST00000414531 1199 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 RAD23BP2-201ENST00000416003 1207 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC012065.2-201ENST00000421295 375 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MTCO2P17-201ENST00000424336 677 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 NANOGP5-201ENST00000424456 877 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 RPL7P44-201ENST00000424827 742 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 VDAC1P3-201ENST00000434069 851 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL357552.1-201ENST00000445254 415 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MTCYBP11-201ENST00000447254 1109 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 RPS24P6-201ENST00000452670 400 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 RN7SL93P-201ENST00000463035 293 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC021678.1-201ENST00000505195 936 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 HMGB1P22-201ENST00000505315 124 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 SNORA70.19-201ENST00000516717 90 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MTND2P32-201ENST00000521584 1038 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL121603.1-201ENST00000553815 142 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL132857.1-201ENST00000555180 708 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 MIR4325-201ENST00000583049 90 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC067852.3-201ENST00000589177 561 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 BNIP3P24-201ENST00000593398 557 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL139395.1-201ENST00000603662 160 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC073657.2-201ENST00000605661 303 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC006023.2-201ENST00000609916 167 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL356321.1-201ENST00000621360 228 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC073348.1-201ENST00000623002 331 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL078595.3-201ENST00000623815 1166 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 LINC02211-204ENST00000642024 1070 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC244517.1-201ENST00000606030 2086 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 MTND4P26-201ENST00000415971 1359 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TNFRSF4P43489 RNU6-216P-201ENST00000363282 104 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 RNU6-878P-201ENST00000384578 110 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 SNRPEP2-201ENST00000397592 279 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 LAP3P1-201ENST00000403648 294 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 RNU2-71P-201ENST00000411395 189 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 SKP1P1-201ENST00000438081 489 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC092427.1-201ENST00000439177 601 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC092155.2-201ENST00000454675 477 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 VN1R17P-201ENST00000472048 1090 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 305.2 ms