Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RPP40P2-201ENST00000603596 712 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 RNU4-5P-201ENST00000607255 135 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 AL590282.1-201ENST00000610379 1136 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 MIR486-1-201ENST00000612171 68 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC023158.2-201ENST00000614876 543 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AL158163.2-201ENST00000619110 700 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AL121895.2-201ENST00000619558 447 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC004925.1-201ENST00000624256 2706 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TNFRSF4P43489 AC018555.1-201ENST00000567548 1980 ntBASIC3.43□□□□□ -1.86
TNFRSF4P43489 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TNFRSF4P43489 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.43□□□□□ -1.86
TNFRSF4P43489 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 CDR1-202ENST00000625883 1485 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MTND4P10-201ENST00000446199 1363 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 Y_RNA.472-201ENST00000384322 102 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 U3.29-201ENST00000391296 212 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL161449.1-201ENST00000414531 1199 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 RAD23BP2-201ENST00000416003 1207 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC012065.2-201ENST00000421295 375 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MTCO2P17-201ENST00000424336 677 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 NANOGP5-201ENST00000424456 877 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 RPL7P44-201ENST00000424827 742 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 VDAC1P3-201ENST00000434069 851 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL357552.1-201ENST00000445254 415 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MTCYBP11-201ENST00000447254 1109 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 RPS24P6-201ENST00000452670 400 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 RN7SL93P-201ENST00000463035 293 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC021678.1-201ENST00000505195 936 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 HMGB1P22-201ENST00000505315 124 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 SNORA70.19-201ENST00000516717 90 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 MTND2P32-201ENST00000521584 1038 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL121603.1-201ENST00000553815 142 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL132857.1-201ENST00000555180 708 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 MIR4325-201ENST00000583049 90 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC067852.3-201ENST00000589177 561 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 BNIP3P24-201ENST00000593398 557 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL139395.1-201ENST00000603662 160 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC073657.2-201ENST00000605661 303 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC006023.2-201ENST00000609916 167 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL356321.1-201ENST00000621360 228 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC073348.1-201ENST00000623002 331 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 AL078595.3-201ENST00000623815 1166 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 LINC02211-204ENST00000642024 1070 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TNFRSF4P43489 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
TNFRSF4P43489 AC244517.1-201ENST00000606030 2086 ntBASIC3.42□□□□□ -1.86
TNFRSF4P43489 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 MTND4P26-201ENST00000415971 1359 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
TNFRSF4P43489 RNU6-216P-201ENST00000363282 104 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 RNU6-878P-201ENST00000384578 110 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 SNRPEP2-201ENST00000397592 279 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 LAP3P1-201ENST00000403648 294 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 RNU2-71P-201ENST00000411395 189 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 SKP1P1-201ENST00000438081 489 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC092427.1-201ENST00000439177 601 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC092155.2-201ENST00000454675 477 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 VN1R17P-201ENST00000472048 1090 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 305.2 ms