Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC3□□□□□ -1.93
COL18A1P39060 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3□□□□□ -1.93
COL18A1P39060 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3□□□□□ -1.93
COL18A1P39060 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC3□□□□□ -1.93
COL18A1P39060 RNU6-1218P-201ENST00000458990 108 ntBASIC3□□□□□ -1.93
COL18A1P39060 RPL21P18-201ENST00000469899 480 ntBASIC3□□□□□ -1.93
COL18A1P39060 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3□□□□□ -1.93
COL18A1P39060 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3□□□□□ -1.93
COL18A1P39060 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC3□□□□□ -1.93
COL18A1P39060 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3□□□□□ -1.93
COL18A1P39060 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC3□□□□□ -1.93
COL18A1P39060 MIR4512-201ENST00000583257 77 ntBASIC3□□□□□ -1.93
COL18A1P39060 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3□□□□□ -1.93
COL18A1P39060 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3□□□□□ -1.93
COL18A1P39060 AC103710.1-201ENST00000610003 901 ntBASIC3□□□□□ -1.93
COL18A1P39060 AC069234.5-201ENST00000611056 416 ntBASIC3□□□□□ -1.93
COL18A1P39060 AL356266.1-201ENST00000623311 483 ntBASIC3□□□□□ -1.93
COL18A1P39060 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL18A1P39060 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL18A1P39060 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
COL18A1P39060 Y_RNA.595-201ENST00000410403 105 ntBASIC2.99□□□□□ -1.93
COL18A1P39060 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL18A1P39060 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.99□□□□□ -1.93
COL18A1P39060 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.99□□□□□ -1.93
COL18A1P39060 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.99□□□□□ -1.93
COL18A1P39060 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC2.99□□□□□ -1.93
COL18A1P39060 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.99□□□□□ -1.93
COL18A1P39060 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.99□□□□□ -1.93
COL18A1P39060 BX664608.1-201ENST00000610519 487 ntBASIC2.99□□□□□ -1.93
COL18A1P39060 AC107905.1-201ENST00000616204 426 ntBASIC2.99□□□□□ -1.93
COL18A1P39060 AL160394.1-201ENST00000624765 724 ntBASIC2.99□□□□□ -1.93
COL18A1P39060 PNPT1P2-201ENST00000456768 2050 ntBASIC2.99□□□□□ -1.93
COL18A1P39060 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL18A1P39060 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.99□□□□□ -1.93
COL18A1P39060 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
COL18A1P39060 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.98□□□□□ -1.93
COL18A1P39060 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.98□□□□□ -1.93
COL18A1P39060 Y_RNA.164-201ENST00000363709 102 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.98□□□□□ -1.93
COL18A1P39060 RPS24P8-201ENST00000431490 402 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 RPS15AP28-201ENST00000435088 386 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.98□□□□□ -1.93
COL18A1P39060 NIPA2P2-201ENST00000496376 1083 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 XKRY-201ENST00000510392 1100 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC2.98□□□□□ -1.93
COL18A1P39060 MIR4716-201ENST00000579628 84 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 VN1R79P-201ENST00000593540 513 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 AC005021.1-201ENST00000608730 355 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 AL118496.1-201ENST00000440201 1812 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 AC093311.1-201ENST00000506586 2021 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.98□□□□□ -1.93
COL18A1P39060 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
COL18A1P39060 AC009501.3-201ENST00000605001 1352 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 AC090229.1-201ENST00000590983 1609 ntBASIC2.98□□□□□ -1.93
COL18A1P39060 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL18A1P39060 MIR21-201ENST00000362134 72 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 RNU1-91P-201ENST00000364746 163 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 SNORA80E-201ENST00000384744 137 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 AC240504.1-201ENST00000395709 845 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 AL121882.1-201ENST00000422893 417 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.97□□□□□ -1.93
COL18A1P39060 AL592045.1-201ENST00000429867 352 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 AC244505.4-201ENST00000434905 287 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 SSXP5-201ENST00000443473 287 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 NPM1P49-201ENST00000448027 714 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.97□□□□□ -1.93
COL18A1P39060 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC2.97□□□□□ -1.93
COL18A1P39060 PDCL2P2-201ENST00000533651 189 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.97□□□□□ -1.93
COL18A1P39060 MTCYBP28-201ENST00000566728 1132 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.97□□□□□ -1.93
COL18A1P39060 MIR4644-201ENST00000579929 84 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 AC009831.4-201ENST00000620744 325 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL18A1P39060 AL512646.1-201ENST00000269395 1077 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 MTCYBP12-201ENST00000440559 1134 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
COL18A1P39060 RNU6-347P-201ENST00000516658 105 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC2.97□□□□□ -1.93
COL18A1P39060 MTCO2P22-201ENST00000603246 681 ntBASIC2.97□□□□□ -1.93
COL18A1P39060 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.96□□□□□ -1.94
COL18A1P39060 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.96□□□□□ -1.94
COL18A1P39060 Y_RNA.140-201ENST00000363474 103 ntBASIC2.96□□□□□ -1.94
COL18A1P39060 MIR221-201ENST00000385135 110 ntBASIC2.96□□□□□ -1.94
COL18A1P39060 SNORA17.3-201ENST00000391159 129 ntBASIC2.96□□□□□ -1.94
COL18A1P39060 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.96□□□□□ -1.94
COL18A1P39060 RNA5SP498-201ENST00000411342 120 ntBASIC2.96□□□□□ -1.94
COL18A1P39060 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC2.96□□□□□ -1.94
COL18A1P39060 RN7SKP210-201ENST00000459176 261 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms