Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL035425.3-201ENST00000564206 4996 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC9P31274 AF117829.1-206ENST00000621883 3802 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HOXC9P31274 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC9P31274 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC9P31274 RNU6-492P-201ENST00000363035 104 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 Y_RNA.408-201ENST00000383987 102 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC004022.2-201ENST00000413824 193 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC9P31274 MTCO3P1-205ENST00000422088 832 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AL513175.1-201ENST00000431492 780 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC9P31274 AC023347.2-201ENST00000433994 462 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC9P31274 Z77249.1-201ENST00000444622 1175 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC9P31274 AL034418.1-201ENST00000448675 860 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC140076.1-201ENST00000449897 361 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC9P31274 RPL21P134-201ENST00000453468 483 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC9P31274 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC9P31274 AC004263.1-201ENST00000479327 332 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 RPL7P47-201ENST00000497299 556 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 BOLA3P3-201ENST00000505182 232 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 MTATP6P22-201ENST00000507369 598 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.23□□□□□ -1.73
HOXC9P31274 MTND2P38-201ENST00000522536 667 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC9P31274 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC9P31274 NBEAP1-201ENST00000554452 979 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC9P31274 AL354943.1-201ENST00000572103 781 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC9P31274 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC9P31274 PRELID3BP8-201ENST00000604148 295 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC131235.4-201ENST00000609288 620 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AP000484.1-201ENST00000620067 1252 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AL512506.2-201ENST00000624472 458 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 AC017037.3-201ENST00000625016 472 ntBASIC4.23□□□□□ -1.73
HOXC9P31274 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HOXC9P31274 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC9P31274 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC9P31274 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC9P31274 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC9P31274 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC9P31274 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
HOXC9P31274 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AC006960.1-201ENST00000419980 153 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXC9P31274 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
HOXC9P31274 EXTL2P1-201ENST00000446218 416 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 RPL7P31-201ENST00000450192 724 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AL162388.1-201ENST00000450912 352 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC9P31274 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXC9P31274 AC110792.2-201ENST00000510278 224 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 OR5H4P-201ENST00000510851 923 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC9P31274 SNORA48.10-201ENST00000516965 160 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AC005832.3-201ENST00000537929 631 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 HIGD1AP17-201ENST00000554576 276 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC009094.1-201ENST00000564443 426 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC145350.1-201ENST00000567426 208 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC138915.2-201ENST00000569776 97 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AL390838.2-201ENST00000602394 274 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AL353778.1-201ENST00000603149 408 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AL158042.1-201ENST00000605338 460 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXC9P31274 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXC9P31274 AC092954.1-201ENST00000609121 445 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC121761.2-201ENST00000617300 689 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AL137790.1-201ENST00000634283 177 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC116618.1-201ENST00000634617 774 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 AC068620.4-201ENST00000636730 1182 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 MIR622-201ENST00000638396 96 ntBASIC4.22□□□□□ -1.73
HOXC9P31274 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXC9P31274 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXC9P31274 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.73
HOXC9P31274 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXC9P31274 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC9P31274 RN7SKP220-201ENST00000410611 288 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 AC092634.6-201ENST00000418558 192 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 RPL7P53-201ENST00000421245 739 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 AL139421.1-201ENST00000423010 169 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC9P31274 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC9P31274 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms