Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SNORA25.6-201ENST00000364121 118 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.77□□□□□ -1.97
COL5A3P25940 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.77□□□□□ -1.97
COL5A3P25940 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC2.77□□□□□ -1.97
COL5A3P25940 ARF4P2-201ENST00000430209 526 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 AL138787.1-202ENST00000437804 898 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 VN1R96P-201ENST00000446052 858 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 AP002371.1-201ENST00000463604 433 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 AC087385.1-201ENST00000475062 312 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 AL049830.2-201ENST00000480072 201 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 RPL36AP21-201ENST00000490372 323 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC2.77□□□□□ -1.97
COL5A3P25940 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.77□□□□□ -1.97
COL5A3P25940 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.77□□□□□ -1.97
COL5A3P25940 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.77□□□□□ -1.97
COL5A3P25940 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.77□□□□□ -1.97
COL5A3P25940 MTND5P29-201ENST00000458676 1807 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A3P25940 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A3P25940 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL5A3P25940 OR5H15-201ENST00000383696 930 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC2.76□□□□□ -1.97
COL5A3P25940 RN7SL499P-201ENST00000481141 276 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.76□□□□□ -1.97
COL5A3P25940 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.76□□□□□ -1.97
COL5A3P25940 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC2.76□□□□□ -1.97
COL5A3P25940 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.76□□□□□ -1.97
COL5A3P25940 HMGB1P41-201ENST00000520234 440 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.76□□□□□ -1.97
COL5A3P25940 AC025423.2-201ENST00000537570 439 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.76□□□□□ -1.97
COL5A3P25940 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.76□□□□□ -1.97
COL5A3P25940 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC2.76□□□□□ -1.97
COL5A3P25940 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL5A3P25940 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC2.76□□□□□ -1.97
COL5A3P25940 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
COL5A3P25940 MIR142-201ENST00000384835 87 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 AL354719.1-201ENST00000406535 843 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 GAPDHP27-201ENST00000447427 1020 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 AC092185.1-201ENST00000491371 97 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 TRAV31-201ENST00000502780 342 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 CD24P2-201ENST00000565486 219 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 AP000942.3-201ENST00000603702 160 ntBASIC2.76□□□□□ -1.97
COL5A3P25940 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.76□□□□□ -1.97
COL5A3P25940 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.76□□□□□ -1.97
COL5A3P25940 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.76□□□□□ -1.97
COL5A3P25940 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.75□□□□□ -1.97
COL5A3P25940 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.75□□□□□ -1.97
COL5A3P25940 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL5A3P25940 MTND5P27-201ENST00000428871 1720 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 MTND5P28-201ENST00000438005 1594 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 AC092326.2-201ENST00000624772 1561 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL5A3P25940 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL5A3P25940 SNORA11.4-201ENST00000408823 129 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 MTND4LP21-201ENST00000415303 295 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 AL355994.1-201ENST00000424379 260 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 RPL36AP6-201ENST00000435770 321 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 TRBV8-1-201ENST00000481590 279 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL5A3P25940 MTND2P17-201ENST00000550281 688 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.75□□□□□ -1.97
COL5A3P25940 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL5A3P25940 AP001004.1-201ENST00000582468 324 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 AP004247.3-201ENST00000608682 624 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 AC245517.5-201ENST00000611529 162 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.75□□□□□ -1.97
COL5A3P25940 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL5A3P25940 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.75□□□□□ -1.97
COL5A3P25940 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL5A3P25940 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL5A3P25940 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL5A3P25940 RNU6-1159P-201ENST00000362933 107 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 Y_RNA.164-201ENST00000363709 102 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
COL5A3P25940 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC2.74□□□□□ -1.97
COL5A3P25940 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.74□□□□□ -1.97
COL5A3P25940 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL5A3P25940 MUPP-201ENST00000438111 566 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 GSTA11P-201ENST00000452866 669 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 CEACAMP4-201ENST00000457676 421 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 RPL23AP42-201ENST00000471152 471 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 AP000926.3-201ENST00000497201 299 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 AC022616.2-201ENST00000523185 300 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.74□□□□□ -1.97
COL5A3P25940 AC068339.2-201ENST00000534395 618 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC2.74□□□□□ -1.97
COL5A3P25940 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.74□□□□□ -1.97
COL5A3P25940 AC078814.3-201ENST00000553036 491 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.74□□□□□ -1.97
COL5A3P25940 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC2.74□□□□□ -1.97
COL5A3P25940 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC2.74□□□□□ -1.97
COL5A3P25940 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.74□□□□□ -1.97
COL5A3P25940 AL022099.1-201ENST00000604551 712 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 AC000123.2-201ENST00000623124 461 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 AC093591.3-201ENST00000634516 308 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 BX005019.1-201ENST00000561881 1810 ntBASIC2.74□□□□□ -1.97
COL5A3P25940 MTCO1P14-201ENST00000441695 1559 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms