Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 Z73965.1-201ENST00000623412 2297 ntBASIC5.72□□□□□ -1.49
LIG1P18858 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
LIG1P18858 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
LIG1P18858 MIR649-201ENST00000384843 97 ntBASIC5.72□□□□□ -1.49
LIG1P18858 MIR765-201ENST00000390226 114 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AL591416.1-201ENST00000404015 867 ntBASIC5.72□□□□□ -1.49
LIG1P18858 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.72□□□□□ -1.49
LIG1P18858 U3.36-201ENST00000408418 213 ntBASIC5.72□□□□□ -1.49
LIG1P18858 MIR1271-201ENST00000408537 86 ntBASIC5.72□□□□□ -1.49
LIG1P18858 SNORA77-201ENST00000408716 125 ntBASIC5.72□□□□□ -1.49
LIG1P18858 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG1P18858 GPM6BP2-201ENST00000432046 144 ntBASIC5.72□□□□□ -1.49
LIG1P18858 MTND3P2-201ENST00000438452 342 ntBASIC5.72□□□□□ -1.49
LIG1P18858 GTF2IP13-201ENST00000438487 386 ntBASIC5.72□□□□□ -1.49
LIG1P18858 GPM6BP1-201ENST00000446387 144 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC006480.1-201ENST00000449887 378 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.72□□□□□ -1.49
LIG1P18858 FGF7P3-201ENST00000454645 303 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC5.72□□□□□ -1.49
LIG1P18858 Y_RNA.639-201ENST00000458981 102 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC022795.1-201ENST00000473808 480 ntBASIC5.72□□□□□ -1.49
LIG1P18858 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.72□□□□□ -1.49
LIG1P18858 AC078785.3-201ENST00000476607 425 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC093270.2-201ENST00000486157 792 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG1P18858 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG1P18858 SNRPCP2-201ENST00000504370 475 ntBASIC5.72□□□□□ -1.49
LIG1P18858 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 RNU6-1170P-201ENST00000515974 106 ntBASIC5.72□□□□□ -1.49
LIG1P18858 RNU4-49P-201ENST00000516080 140 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG1P18858 AC012339.2-201ENST00000523996 453 ntBASIC5.72□□□□□ -1.49
LIG1P18858 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 ELOCP31-201ENST00000540463 467 ntBASIC5.72□□□□□ -1.49
LIG1P18858 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG1P18858 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.72□□□□□ -1.49
LIG1P18858 HMGN2P6-201ENST00000551091 273 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.72□□□□□ -1.49
LIG1P18858 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.72□□□□□ -1.49
LIG1P18858 AC006116.3-201ENST00000592968 361 ntBASIC5.72□□□□□ -1.49
LIG1P18858 SNRPGP17-201ENST00000603780 214 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC243654.2-201ENST00000612843 443 ntBASIC5.72□□□□□ -1.49
LIG1P18858 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.72□□□□□ -1.49
LIG1P18858 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIG1P18858 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
LIG1P18858 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
LIG1P18858 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
LIG1P18858 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
LIG1P18858 OR51H2P-202ENST00000641424 3046 ntBASIC5.71□□□□□ -1.5
LIG1P18858 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIG1P18858 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.71□□□□□ -1.5
LIG1P18858 Y_RNA.144-201ENST00000363521 113 ntBASIC5.71□□□□□ -1.5
LIG1P18858 RNU6-474P-201ENST00000384243 107 ntBASIC5.71□□□□□ -1.5
LIG1P18858 RNU6-43P-201ENST00000384302 107 ntBASIC5.71□□□□□ -1.5
LIG1P18858 RNU6-441P-201ENST00000384545 106 ntBASIC5.71□□□□□ -1.5
LIG1P18858 RNU6-606P-201ENST00000384721 111 ntBASIC5.71□□□□□ -1.5
LIG1P18858 MIR1-2-201ENST00000384961 85 ntBASIC5.71□□□□□ -1.5
LIG1P18858 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIG1P18858 AL359643.1-201ENST00000404109 423 ntBASIC5.71□□□□□ -1.5
LIG1P18858 RPL23AP27-201ENST00000415161 451 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AC093162.1-201ENST00000419682 124 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC5.71□□□□□ -1.5
LIG1P18858 AC007283.2-201ENST00000424739 197 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AC006548.1-201ENST00000427470 102 ntBASIC5.71□□□□□ -1.5
LIG1P18858 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG1P18858 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG1P18858 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
LIG1P18858 HSPE1P28-201ENST00000443139 211 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.71□□□□□ -1.5
LIG1P18858 SLC25A18P1-201ENST00000449385 454 ntBASIC5.71□□□□□ -1.5
LIG1P18858 BX284632.1-201ENST00000478218 541 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AL163973.1-201ENST00000484753 577 ntBASIC5.71□□□□□ -1.5
LIG1P18858 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG1P18858 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.71□□□□□ -1.5
LIG1P18858 RNA5SP360-201ENST00000516555 118 ntBASIC5.71□□□□□ -1.5
LIG1P18858 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.71□□□□□ -1.5
LIG1P18858 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG1P18858 AC063949.1-201ENST00000552900 865 ntBASIC5.71□□□□□ -1.5
LIG1P18858 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
LIG1P18858 AC068831.4-201ENST00000556118 109 ntBASIC5.71□□□□□ -1.5
LIG1P18858 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG1P18858 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC5.71□□□□□ -1.5
LIG1P18858 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG1P18858 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.71□□□□□ -1.5
LIG1P18858 AC011477.5-201ENST00000586571 259 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AC098848.2-201ENST00000588023 330 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AL355816.1-201ENST00000607951 118 ntBASIC5.71□□□□□ -1.5
LIG1P18858 RNU6ATAC35P-201ENST00000609276 444 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AL355472.4-201ENST00000610233 626 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AC123768.4-201ENST00000616244 701 ntBASIC5.71□□□□□ -1.5
LIG1P18858 AC000123.2-201ENST00000623124 461 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms