Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 VPS26BP1-201ENST00000417155 755 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 BEND7P1-201ENST00000422058 457 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 AL365203.2-201ENST00000423444 196 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC11O43248 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC11O43248 TBCAP1-201ENST00000436520 327 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 HLA-N-201ENST00000437516 135 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC11O43248 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC11O43248 RPS11P1-201ENST00000451072 473 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 AC234775.1-201ENST00000454247 670 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 snoU13.4-201ENST00000458916 104 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 BZW1P2-201ENST00000473537 826 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 RPS4XP15-201ENST00000489210 795 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC11O43248 RPF2P2-201ENST00000504693 896 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 RNU6-232P-201ENST00000517144 64 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC11O43248 AC087276.1-201ENST00000529659 480 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.13□□□□□ -1.75
HOXC11O43248 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC11O43248 AC091515.1-201ENST00000548110 679 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC11O43248 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXC11O43248 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXC11O43248 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC11O43248 AC012435.1-202ENST00000568772 240 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC11O43248 MIR4429-201ENST00000580105 73 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXC11O43248 AC012417.1-201ENST00000582307 1039 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 BNIP3P33-201ENST00000598912 569 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXC11O43248 AC099063.3-201ENST00000642066 185 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 AC027290.2-201ENST00000623210 18662 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC11O43248 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC11O43248 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXC11O43248 GABPAP-201ENST00000419271 1356 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 Z82217.1-201ENST00000625157 8149 ntBASIC4.13□□□□□ -1.75
HOXC11O43248 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXC11O43248 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
HOXC11O43248 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 AL672167.1-206ENST00000356293 943 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 SNORA62.3-201ENST00000365110 153 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXC11O43248 RNU2-71P-201ENST00000411395 189 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 AL389915.1-201ENST00000422463 466 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXC11O43248 UBE2D3P1-201ENST00000436669 444 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 RPL7P28-201ENST00000437739 740 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC11O43248 OR6K5P-201ENST00000447050 945 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 RPL21P104-201ENST00000464143 478 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 AC034222.1-201ENST00000494052 532 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC11O43248 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC11O43248 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC11O43248 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC4.12□□□□□ -1.75
HOXC11O43248 AC103783.1-201ENST00000520506 373 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 MTND2P38-201ENST00000522536 667 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC11O43248 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC11O43248 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.12□□□□□ -1.75
HOXC11O43248 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.12□□□□□ -1.75
HOXC11O43248 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 AC006254.3-201ENST00000603353 884 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 MIR92B-201ENST00000607575 96 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 AC004223.4-201ENST00000612426 332 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 AC122133.1-201ENST00000613964 233 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 AC078883.4-201ENST00000623218 367 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 AC079248.2-201ENST00000623779 326 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 AC097655.1-201ENST00000635075 318 ntBASIC4.12□□□□□ -1.75
HOXC11O43248 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
HOXC11O43248 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXC11O43248 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
HOXC11O43248 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
HOXC11O43248 MTCO1P9-201ENST00000505577 1534 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 AC116096.1-201ENST00000566804 2314 ntBASIC4.11□□□□□ -1.75
HOXC11O43248 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXC11O43248 RNU6-433P-201ENST00000363216 104 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms