Protein–RNA interactions for Protein: O54788

Dffb, DNA fragmentation factor subunit beta, mousemouse

Known RBP Predictions only

Length 344 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DffbO54788 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
DffbO54788 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
DffbO54788 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
DffbO54788 Zkscan3-208ENSMUST00000224820 5398 ntBASIC14.09□□□□□ -0.15
DffbO54788 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
DffbO54788 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
DffbO54788 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
DffbO54788 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
DffbO54788 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
DffbO54788 Gm18958-201ENSMUST00000174258 762 ntBASIC14.08□□□□□ -0.16
DffbO54788 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC14.08□□□□□ -0.16
DffbO54788 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 AC120002.2-201ENSMUST00000220205 773 ntBASIC14.08□□□□□ -0.16
DffbO54788 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
DffbO54788 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC14.08□□□□□ -0.16
DffbO54788 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
DffbO54788 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC14.07□□□□□ -0.16
DffbO54788 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
DffbO54788 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.07□□□□□ -0.16
DffbO54788 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
DffbO54788 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
DffbO54788 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC14.07□□□□□ -0.16
DffbO54788 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC14.07□□□□□ -0.16
DffbO54788 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
DffbO54788 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC14.07□□□□□ -0.16
DffbO54788 Il3ra-202ENSMUST00000223589 738 ntBASIC14.07□□□□□ -0.16
DffbO54788 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC14.07□□□□□ -0.16
DffbO54788 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC14.07□□□□□ -0.16
DffbO54788 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
DffbO54788 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
DffbO54788 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
DffbO54788 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 AC175538.1-201ENSMUST00000225343 1269 ntBASIC14.06□□□□□ -0.16
DffbO54788 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Gm43598-201ENSMUST00000202482 2479 ntBASIC14.06□□□□□ -0.16
DffbO54788 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
DffbO54788 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
DffbO54788 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC14.05□□□□□ -0.16
DffbO54788 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
DffbO54788 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
DffbO54788 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms