Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC010733.1-201ENST00000451515 401 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC002553.2-201ENST00000453217 340 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC112492.4-201ENST00000456549 352 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 VN1R104P-201ENST00000505115 1009 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 IL7R-208ENST00000511982 612 ntTSL 2 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 RNU6-1143P-201ENST00000516125 104 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 IGKV2-18-201ENST00000522607 343 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC122688.1-201ENST00000541494 223 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 SNHG22-203ENST00000617833 660 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 MIR8062-201ENST00000621515 85 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AL606534.2-204ENST00000635008 178 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 RNU6-266P-201ENST00000364225 107 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 RNU6-637P-201ENST00000384050 107 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 Y_RNA.447-201ENST00000384184 113 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 CEP57L1P1-201ENST00000430943 1201 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AZGP1P2-201ENST00000454506 345 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC100832.1-201ENST00000471945 383 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 RN7SL583P-201ENST00000475692 287 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC026979.1-201ENST00000492525 396 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC011411.1-201ENST00000509592 876 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 DYNLL1P4-201ENST00000549314 266 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 SETP7-201ENST00000552169 453 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC018809.2-201ENST00000602436 3823 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC016727.2-201ENST00000603988 621 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AL022394.1-201ENST00000606979 292 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC109309.2-201ENST00000612597 332 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 MIR8080-201ENST00000622224 89 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AP001784.1-201ENST00000624107 428 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
USP3Q9Y6I4 AC008758.3-201ENST00000507003 1829 ntBASIC5.81□□□□□ -1.48
USP3Q9Y6I4 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 MTND5P7-201ENST00000413558 1798 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RNA5SP319-201ENST00000362768 119 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RN7SKP185-201ENST00000362813 326 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RNVU1-3-201ENST00000364313 161 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 SNORA16.2-201ENST00000390991 127 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 U3.29-201ENST00000391296 212 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AL391361.1-201ENST00000405580 489 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RN7SKP159-201ENST00000410657 292 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 BX276092.6-201ENST00000430476 250 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AL591704.1-201ENST00000432574 275 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AL353597.2-202ENST00000434901 373 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 BX276092.8-201ENST00000455722 250 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RPS23P3-201ENST00000470993 430 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 RN7SL547P-201ENST00000490793 290 ntBASIC5.8□□□□□ -1.48
USP3Q9Y6I4 AC009901.1-201ENST00000506703 541 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms