Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC022968.1-201ENST00000567372 442 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 MTATP6P3-201ENST00000581686 676 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC010857.1-201ENST00000606398 594 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 MIR4496-201ENST00000635896 61 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC074029.4-201ENST00000624796 1859 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 Z82217.1-201ENST00000625157 8149 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC092447.10-201ENST00000620607 1652 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 RNA5SP509-201ENST00000364577 119 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-259P-201ENST00000383999 107 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-809P-201ENST00000384461 107 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 Y_RNA.582-201ENST00000391023 95 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 RPL31P1-201ENST00000398116 372 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 Y_RNA.608-201ENST00000410647 95 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-248P-201ENST00000410720 107 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 RPL31P45-201ENST00000419532 356 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 BX890604.2-201ENST00000427883 474 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC244505.5-201ENST00000443639 207 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AP000542.1-201ENST00000448473 371 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 BX276092.4-201ENST00000452056 248 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC093899.1-201ENST00000457984 376 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 RPL9P33-201ENST00000484311 566 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 RPL29P14-201ENST00000495837 428 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC010460.1-201ENST00000507087 466 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AF213884.2-201ENST00000510417 903 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 GNRHR2P1-201ENST00000555315 631 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AL390208.1-201ENST00000605885 644 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC113194.1-201ENST00000606037 500 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC091965.4-201ENST00000607691 587 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 MIR7151-201ENST00000617477 60 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC068137.3-201ENST00000639191 341 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC099654.12-201ENST00000639868 649 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AC073869.6-201ENST00000640656 341 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 AP002001.2-201ENST00000529025 1469 ntBASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
LIMCH1Q9UPQ0 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 IQCB2P-201ENST00000401788 1633 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 SNORD35B-201ENST00000363660 87 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 SNORD82-201ENST00000365530 70 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-744P-201ENST00000365557 107 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-730P-201ENST00000383954 104 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-1316P-201ENST00000384242 108 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-297P-201ENST00000384636 107 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 RPS4XP9-201ENST00000405151 780 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 CHIAP3-201ENST00000423668 1133 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 OR8F1P-201ENST00000425243 930 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AL445669.1-201ENST00000426743 755 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AL035410.1-201ENST00000427409 427 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AL590233.1-201ENST00000430017 456 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 SDCBPP1-201ENST00000440192 890 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 NDUFAF4P4-201ENST00000454883 502 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 KLF3P2-201ENST00000465138 268 ntBASIC4.79□□□□□ -1.64
LIMCH1Q9UPQ0 AC087385.1-201ENST00000475062 312 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms