Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC024587.1-201ENST00000505925 2157 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 RNA5SP375-201ENST00000362975 119 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 RNA5SP443-201ENST00000363083 132 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 RN7SKP128-201ENST00000364270 303 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 RNA5SP478-201ENST00000364657 115 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 SNORA43.1-201ENST00000364863 140 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AC092809.3-201ENST00000415453 231 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AC108032.1-201ENST00000416706 207 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 SYF2P2-201ENST00000417620 583 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 SNORD127-201ENST00000458892 86 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AL133445.1-201ENST00000467051 452 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AC108860.1-201ENST00000484521 383 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 RN7SL57P-201ENST00000493687 290 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AP000889.1-201ENST00000530968 660 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AC093227.2-201ENST00000589357 285 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 ELOCP5-201ENST00000604924 333 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AC103858.2-201ENST00000621471 543 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 AC138907.8-201ENST00000623981 2256 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 C4BPAP1-201ENST00000415474 1893 ntBASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
LIMD1Q9UGP4 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.27□□□□□ -1.4
LIMD1Q9UGP4 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AC010615.1-201ENST00000594254 1764 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 RNA5SP46-201ENST00000362370 120 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 Y_RNA.151-201ENST00000363566 112 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 SNORA70-201ENST00000384436 135 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 HMGB1P20-201ENST00000402555 677 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AL138885.1-201ENST00000405921 675 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 RNU4-64P-201ENST00000410795 131 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AC007568.1-201ENST00000422912 471 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AL662874.1-201ENST00000426065 230 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AC004866.2-201ENST00000438285 481 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 MTND2P29-201ENST00000438595 412 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 RPL21P2-201ENST00000440049 481 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 FTH1P25-201ENST00000447665 469 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 RPL23AP31-201ENST00000456160 467 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 RPL21P41-201ENST00000459863 264 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AC092824.1-201ENST00000483524 576 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 RPL38P3-201ENST00000484463 213 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AC069499.1-201ENST00000489433 509 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AC022447.4-201ENST00000504053 364 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 HIGD1AP3-201ENST00000515857 278 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 RN7SKP258-201ENST00000517151 304 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 MTND4LP5-201ENST00000605152 292 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 AL591516.1-201ENST00000611326 274 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 SOCS5P3-201ENST00000425115 1576 ntBASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
LIMD1Q9UGP4 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AL451142.2-201ENST00000429076 2090 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 AC138393.1-203ENST00000327086 343 ntBASIC6.26□□□□□ -1.41
LIMD1Q9UGP4 SNORA64.1-201ENST00000362600 132 ntBASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms