Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC025449.1-201ENST00000603896 529 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AL049634.3-201ENST00000604968 457 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC087783.2-201ENST00000605070 562 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC010680.4-201ENST00000605334 543 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC024940.4-201ENST00000605507 246 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 BX005214.3-202ENST00000619809 325 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC022106.2-201ENST00000620114 757 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 AC000123.3-201ENST00000624029 4975 ntBASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
TRIM39Q9HCM9 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 CKAP2P1-201ENST00000555477 2049 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RNU5E-8P-201ENST00000363502 116 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC007738.1-201ENST00000413892 348 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 BEND7P1-201ENST00000422058 457 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RPL23AP38-201ENST00000423801 469 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RPL23AP30-201ENST00000432419 501 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC104651.2-201ENST00000447549 528 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 FDX1P2-201ENST00000450769 375 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RAD23BP3-201ENST00000454157 1152 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RNU6-420P-201ENST00000458780 107 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RPS3AP41-201ENST00000462701 778 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC068305.1-201ENST00000497406 726 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC020893.1-201ENST00000502452 580 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 STMN1P2-201ENST00000508435 439 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RNU6-1220P-201ENST00000517126 108 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AP001646.1-201ENST00000527936 915 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 PDCD5P1-201ENST00000543528 309 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 CBX3P5-201ENST00000552017 521 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AL133153.1-201ENST00000557756 303 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC005730.3-201ENST00000583067 366 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AL049539.1-201ENST00000611964 459 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 FRG1KP-201ENST00000623592 341 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 CR381572.2-201ENST00000624852 397 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC108751.5-201ENST00000492880 1336 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 ZNF680P1-201ENST00000436625 1469 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 AC104118.1-201ENST00000607625 1589 ntBASIC4.87□□□□□ -1.63
TRIM39Q9HCM9 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 HSPE1P11-201ENST00000339579 310 ntBASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 MT-TL1-201ENST00000386347 75 ntBASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 AL080315.1-201ENST00000406055 466 ntBASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 RNU2-9P-201ENST00000410194 145 ntBASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 RNA5SP118-201ENST00000410385 109 ntBASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 AC092447.6-201ENST00000414578 210 ntBASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.86□□□□□ -1.63
TRIM39Q9HCM9 OR4K11P-201ENST00000431829 904 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 163.6 ms