Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SMC1BQ8NDV3 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 RNU1-14P-201ENST00000362759 152 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 RNU6-297P-201ENST00000384636 107 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 ARL4AP5-201ENST00000404372 599 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC013429.2-201ENST00000418798 781 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 RPS15AP40-201ENST00000419621 391 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 NANOGP6-201ENST00000429190 847 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 RPS20P1-201ENST00000434853 354 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AL022238.1-201ENST00000442557 355 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 RPL7P36-201ENST00000444633 681 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 MTND1P1-201ENST00000445453 368 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 RPS20P21-201ENST00000466859 343 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AL358832.1-201ENST00000497800 389 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AL592156.1-201ENST00000508758 304 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC011352.1-201ENST00000512300 793 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC022790.1-201ENST00000522872 204 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC087481.2-201ENST00000565492 330 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AL359999.1-201ENST00000604513 294 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 BCRP9-201ENST00000605312 388 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 COX6CP4-201ENST00000605798 228 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AL513477.2-201ENST00000607858 568 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 MIR6891-201ENST00000618788 93 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 AC009318.4-201ENST00000620496 486 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 FAM157B-203ENST00000639350 358 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 SAGE4P-201ENST00000442271 3381 ntBASIC5.18□□□□□ -1.58
SMC1BQ8NDV3 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 SAGE2P-201ENST00000420011 2126 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 RNU6-1279P-201ENST00000383917 103 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 RNA5SP36-201ENST00000410197 133 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 RNU6-248P-201ENST00000410720 107 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 SNORA57.3-201ENST00000411095 141 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 MTATP6P27-201ENST00000416987 621 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 RSU1P2-202ENST00000437884 485 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AC073614.1-201ENST00000438690 650 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 GEMIN8P3-201ENST00000445417 720 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 BTF3P6-201ENST00000448054 499 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 Z82190.1-201ENST00000454534 490 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AL136126.1-201ENST00000473603 402 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AP001025.2-201ENST00000490908 477 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 PDLIM1P4-201ENST00000504327 1006 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 NDUFB4P2-201ENST00000509515 391 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 RPL23AP94-201ENST00000512518 302 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 RN7SKP83-201ENST00000516512 178 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 RN7SKP82-201ENST00000516786 223 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AC092470.1-201ENST00000546187 132 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AL008729.2-201ENST00000606393 473 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 SNORD91B-202ENST00000608459 222 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 AC091834.1-201ENST00000614543 472 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 SEPT14P19-203ENST00000633205 211 ntBASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.17□□□□□ -1.58
SMC1BQ8NDV3 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 ZNF285B-201ENST00000561698 1767 ntBASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 AC097714.1-201ENST00000511272 1647 ntBASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 AP002001.2-201ENST00000529025 1469 ntBASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 RNU6-878P-201ENST00000384578 110 ntBASIC5.16□□□□□ -1.58
SMC1BQ8NDV3 RN7SKP235-201ENST00000410662 305 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms