Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC139495.1-202ENST00000513164 354 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 IGKV2-36-201ENST00000519999 223 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC090502.2-201ENST00000549267 280 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 ARL2BPP2-201ENST00000550907 489 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AL352979.3-201ENST00000553515 247 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 MIR4286-201ENST00000580651 93 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 TPMTP1-201ENST00000592307 737 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 BNIP3P10-201ENST00000605360 577 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC034229.5-201ENST00000624258 185 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 AC091905.1-201ENST00000624400 311 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 THAP12P5-201ENST00000405864 2275 ntBASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC5.64□□□□□ -1.51
USHBP1Q8N6Y0 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RNA5SP307-201ENST00000362863 116 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RNU1-85P-201ENST00000364127 164 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RN7SKP266-201ENST00000410232 287 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RNU6-195P-201ENST00000411352 109 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RPL23AP16-201ENST00000441715 421 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC007677.1-201ENST00000445757 515 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 MTCO1P42-201ENST00000457379 726 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AL592156.1-201ENST00000508758 304 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RNU6-1281P-201ENST00000516223 105 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RNA5SP73-201ENST00000516744 108 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AL845331.3-202ENST00000562856 261 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC122134.1-201ENST00000565664 1104 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RPS3AP23-202ENST00000574601 686 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC053481.4-201ENST00000583164 216 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 BNIP3P22-201ENST00000593399 556 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 CKS1BP3-201ENST00000600888 237 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC139792.3-201ENST00000623525 224 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC027228.2-201ENST00000567141 2154 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 AC093849.1-201ENST00000563631 2209 ntBASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC5.63□□□□□ -1.51
USHBP1Q8N6Y0 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AL121972.1-201ENST00000402023 252 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AL603766.1-201ENST00000407763 664 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 RNU2-28P-201ENST00000410457 189 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 SNORA74C-2-201ENST00000411179 201 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 JKAMPP1-201ENST00000413804 919 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC233981.1-201ENST00000423224 461 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 CEACAMP1-201ENST00000434624 1035 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AL035551.1-201ENST00000446931 348 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 RPL23AP20-201ENST00000447965 421 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC132479.1-201ENST00000449160 144 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AL133244.1-201ENST00000456007 258 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 MTND5P5-201ENST00000503764 376 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 MTCO3P9-201ENST00000506989 781 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 NPM1P41-201ENST00000512920 831 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 RNA5SP143-201ENST00000516936 115 ntBASIC5.62□□□□□ -1.51
USHBP1Q8N6Y0 AC018442.3-201ENST00000523025 183 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms