Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.95□□□□□ -1.46
NPAS3Q8IXF0 AC130304.1-201ENST00000622942 2385 ntBASIC5.95□□□□□ -1.46
NPAS3Q8IXF0 AL161756.3-201ENST00000641216 2071 ntBASIC5.95□□□□□ -1.46
NPAS3Q8IXF0 AC007342.5-201ENST00000571340 2142 ntBASIC5.95□□□□□ -1.46
NPAS3Q8IXF0 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
NPAS3Q8IXF0 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.95□□□□□ -1.46
NPAS3Q8IXF0 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC092747.4-201ENST00000620519 1861 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 U3.11-201ENST00000364476 212 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 Y_RNA.261-201ENST00000364631 102 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 RNA5SP30-201ENST00000365552 115 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 Y_RNA.576-201ENST00000384781 102 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 RNA5SP105-201ENST00000391123 113 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 RNA5SP498-201ENST00000411342 120 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC015977.1-201ENST00000418887 292 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 RPL21P109-201ENST00000422213 475 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AL139148.1-201ENST00000427122 680 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 RHOT1P3-201ENST00000436571 331 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 CYCSP12-201ENST00000437729 300 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 SSXP4-201ENST00000451349 245 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC004129.2-201ENST00000457229 287 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 RN7SL826P-201ENST00000479724 288 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 RPS4XP1-201ENST00000482189 787 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC020893.1-201ENST00000502452 580 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 YWHAEP4-201ENST00000505390 198 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC016559.2-201ENST00000510759 359 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC074255.1-201ENST00000511259 501 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 Y_RNA.719-201ENST00000517156 106 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 HSPE1P2-201ENST00000554777 306 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC060771.1-201ENST00000582031 164 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AP000843.1-201ENST00000624880 701 ntBASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
NPAS3Q8IXF0 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 RNA5SP183-201ENST00000362452 119 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 Y_RNA.273-201ENST00000364703 102 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 Y_RNA.626-201ENST00000411288 95 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AC114491.1-201ENST00000416095 246 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 HSPD1P21-201ENST00000436541 245 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 RPEP5-201ENST00000441137 268 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 PRDX3P3-201ENST00000447765 522 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 CEACAMP6-201ENST00000452007 574 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 RN7SL172P-201ENST00000460535 303 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 FPGT-203ENST00000467578 601 ntTSL 2 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 RN7SL51P-201ENST00000468230 285 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AL355032.1-201ENST00000472981 438 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AC026801.1-201ENST00000497178 464 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AC096745.1-201ENST00000509945 370 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 IGHVII-53-1-201ENST00000519538 255 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AF279873.1-201ENST00000523393 313 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 MIR4700-201ENST00000578311 74 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 SNORD39.3-201ENST00000584451 71 ntBASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.93□□□□□ -1.46
NPAS3Q8IXF0 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms