Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CLIC4P1-201ENST00000453177 535 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 RPL23AP44-201ENST00000482216 473 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 ACTR6P1-201ENST00000514311 1104 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 RNA5SP385-201ENST00000515947 110 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 AADACP1-206ENST00000561502 1193 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 MIR4506-201ENST00000584693 77 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 CFTRP2-201ENST00000634304 199 ntBASIC2.98□□□□□ -1.93
CCDC88AQ3V6T2 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 RNU6-1159P-201ENST00000362933 107 ntBASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 Y_RNA.118-201ENST00000363300 101 ntBASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 Y_RNA.164-201ENST00000363709 102 ntBASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 AL606490.7-201ENST00000433136 191 ntBASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 AC026436.1-201ENST00000510537 270 ntBASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 CKS1BP1-201ENST00000555221 240 ntBASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CCDC88AQ3V6T2 Y_RNA.238-201ENST00000364441 102 ntBASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 AC104389.3-201ENST00000445629 235 ntBASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 VN1R96P-201ENST00000446052 858 ntBASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 MIR6845-201ENST00000613182 61 ntBASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 U4.3-201ENST00000621047 82 ntBASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 U6.98-201ENST00000637157 84 ntBASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.96□□□□□ -1.93
CCDC88AQ3V6T2 GABPAP-201ENST00000419271 1356 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 DYNLT3P1-201ENST00000378574 347 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 RNU1-73P-201ENST00000383971 164 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AL024474.1-201ENST00000404655 591 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AL162578.1-201ENST00000406202 378 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AL096701.2-201ENST00000416920 238 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 SAR1AP4-201ENST00000429225 591 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 GSTA11P-201ENST00000452866 669 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 RPS27AP9-201ENST00000477681 438 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AC092436.1-201ENST00000506450 503 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 MTND4P2-201ENST00000507767 1203 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AC021269.2-201ENST00000532318 330 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AC018630.1-201ENST00000541376 925 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 GMCL1P2-201ENST00000605230 823 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AC019131.2-201ENST00000609071 870 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 PISRT1-201ENST00000626175 531 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 AL512643.1-201ENST00000635735 524 ntBASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
CCDC88AQ3V6T2 SNORA80E-201ENST00000384744 137 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 MIR92A2-201ENST00000385299 75 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AL023284.1-201ENST00000403956 276 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 TRGV6-201ENST00000417928 299 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AP000926.3-201ENST00000497201 299 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AC112673.1-201ENST00000513168 575 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 CKS1BP7-201ENST00000522230 235 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AC022884.3-201ENST00000579571 248 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 MIR8070-201ENST00000616510 88 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AC097714.1-201ENST00000511272 1647 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AC009487.4-201ENST00000624969 3585 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 AP001148.1-201ENST00000624124 2359 ntBASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
CCDC88AQ3V6T2 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AC011155.1-201ENST00000316512 456 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AC106872.3-201ENST00000495104 446 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 OR4A45P-201ENST00000529954 901 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 OR5D17P-201ENST00000531492 978 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 MTND5P21-201ENST00000531961 522 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 OR7K1P-201ENST00000546439 926 ntBASIC2.94□□□□□ -1.94
CCDC88AQ3V6T2 AC068714.1-201ENST00000559623 800 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms