Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC010468.1-201ENST00000461022 817 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 RPS3AP43-201ENST00000479743 781 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC093809.1-201ENST00000509155 340 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 OR5BM1P-201ENST00000512021 366 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 RNU6-759P-201ENST00000516740 103 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 IGKV2D-19-201ENST00000523346 262 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 OR4R3P-201ENST00000525084 838 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AL669831.4-202ENST00000590817 238 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AL163642.2-201ENST00000604722 1019 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 HMGB1P50-201ENST00000605814 607 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 MIR6852-201ENST00000621699 66 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC127502.3-201ENST00000636170 1206 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 U6.105-201ENST00000637379 88 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 AC012321.1-201ENST00000561622 1588 ntBASIC3.96□□□□□ -1.78
COL28A1Q2UY09 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.96□□□□□ -1.78
COL28A1Q2UY09 DCAF13P1-201ENST00000495256 1330 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 RNU6-723P-201ENST00000383973 107 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 RNU6-952P-201ENST00000391164 108 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL031679.1-201ENST00000400616 525 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 RN7SKP156-201ENST00000410308 342 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 Z99497.1-201ENST00000421282 135 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 MTND5P14-201ENST00000441481 1267 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL445669.2-201ENST00000454425 421 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 snoU109.4-201ENST00000458953 143 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC072039.1-201ENST00000477611 581 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL358832.1-201ENST00000497800 389 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC105313.1-201ENST00000509121 353 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 MTCYBP43-201ENST00000513621 740 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC093853.1-201ENST00000515689 483 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC091515.1-201ENST00000548110 679 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL360157.1-201ENST00000565962 87 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 U73479.1-201ENST00000618062 168 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AC026422.1-201ENST00000623961 452 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.95□□□□□ -1.78
COL28A1Q2UY09 AL022578.1-201ENST00000439330 1433 ntBASIC3.95□□□□□ -1.78
COL28A1Q2UY09 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
COL28A1Q2UY09 RNU1-15P-201ENST00000353977 144 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 MIR124-3-201ENST00000384866 87 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 RNU6-821P-201ENST00000390995 107 ntBASIC3.94□□□□□ -1.78
COL28A1Q2UY09 HSPD1P16-201ENST00000402302 394 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms