| CNTN1 | Q12860 | SMCO3-201 | ENST00000316048 | 2104 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RAP2C-AS1-202 | ENST00000441399 | 3473 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | ANGPTL1-202 | ENST00000367629 | 2289 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | SEPT7P7-201 | ENST00000420492 | 1301 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | C6orf10-205 | ENST00000527965 | 2076 nt | APPRIS ALT2 TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | KNTC1-204 | ENST00000436959 | 2412 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | OR1C1-202 | ENST00000641256 | 3719 nt | APPRIS P1 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AL645937.1-201 | ENST00000641739 | 1652 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | TTC41P-203 | ENST00000548527 | 1475 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | GABRG2-222 | ENST00000639975 | 3662 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | KLRC4-201 | ENST00000309384 | 930 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | DEFB112-201 | ENST00000322246 | 342 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | CNTN6-201 | ENST00000350110 | 3814 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RNA5SP42-201 | ENST00000364278 | 115 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | SNORD6-201 | ENST00000365444 | 73 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC016769.3-201 | ENST00000396562 | 315 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | HIGD1C-201 | ENST00000398455 | 371 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | DEFB116-201 | ENST00000400549 | 309 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AL024474.1-201 | ENST00000404655 | 591 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | GRM7-AS1-201 | ENST00000420230 | 430 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC006989.1-201 | ENST00000427212 | 131 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | MRPS18BP2-201 | ENST00000434310 | 759 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | VN1R10P-201 | ENST00000447106 | 875 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC098820.1-201 | ENST00000453157 | 512 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RPL21P134-201 | ENST00000453468 | 483 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RNU7-170P-201 | ENST00000459303 | 61 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | PABPC1P3-201 | ENST00000469174 | 459 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC091212.1-201 | ENST00000474798 | 395 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | ACTG1P13-201 | ENST00000486987 | 1043 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RPL7P47-201 | ENST00000497299 | 556 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | OR5H5P-201 | ENST00000503164 | 928 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC097467.3-212 | ENST00000512269 | 568 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RNU4ATAC10P-201 | ENST00000516967 | 122 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC009623.2-201 | ENST00000522524 | 465 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | LINC00301-204 | ENST00000532591 | 470 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | MTCO2P15-201 | ENST00000532655 | 656 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC022367.1-202 | ENST00000535066 | 537 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | MRPL42-203 | ENST00000547098 | 701 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AL133370.1-201 | ENST00000554679 | 537 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC099313.1-201 | ENST00000568437 | 452 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC011509.1-201 | ENST00000589512 | 164 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC006116.9-201 | ENST00000591630 | 649 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | WDR7-OT1-201 | ENST00000592032 | 565 nt | TSL 4 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC006557.3-201 | ENST00000592926 | 517 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | PPP3CB-AS1-206 | ENST00000595935 | 675 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC135012.2-201 | ENST00000600234 | 479 nt | TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC022145.1-201 | ENST00000600673 | 383 nt | TSL 3 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | DUXAP3-201 | ENST00000603616 | 594 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC113368.1-201 | ENST00000603736 | 382 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AD001527.1-201 | ENST00000604228 | 379 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AL360267.1-201 | ENST00000607309 | 666 nt | TSL 4 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | C1orf185-204 | ENST00000612209 | 899 nt | APPRIS ALT2 TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC121761.2-201 | ENST00000617300 | 689 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | ZNF461-214 | ENST00000618437 | 774 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC009318.4-201 | ENST00000620496 | 486 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | C2orf27A-204 | ENST00000623058 | 969 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | TTN-AS1-267 | ENST00000628826 | 662 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC010976.1-210 | ENST00000630740 | 1005 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC008993.2-201 | ENST00000631744 | 806 nt | BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | HPGDS-201 | ENST00000295256 | 1636 nt | APPRIS P1 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | PPIP5K2-215 | ENST00000613674 | 4933 nt | APPRIS ALT2 TSL 2 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | SYCP2-201 | ENST00000357552 | 5567 nt | APPRIS P2 TSL 1 (best) BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | CACNB4-260 | ENST00000637762 | 3800 nt | TSL 5 BASIC | 3.5 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | C2orf78-201 | ENST00000409561 | 3045 nt | APPRIS P1 TSL 2 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | TAS2R30-201 | ENST00000539585 | 1687 nt | APPRIS P1 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | DCUN1D1-201 | ENST00000292782 | 7954 nt | APPRIS P1 TSL 1 (best) BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | UBE2W-203 | ENST00000517608 | 8426 nt | TSL 1 (best) BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | TFEC-201 | ENST00000265440 | 6628 nt | TSL 1 (best) BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | PPIL4-202 | ENST00000340881 | 1089 nt | TSL 1 (best) BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RNU6-730P-201 | ENST00000383954 | 104 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | SNORA9-201 | ENST00000384215 | 133 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | ARF4P3-201 | ENST00000397387 | 509 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AL391417.1-201 | ENST00000404100 | 426 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | BX323014.1-201 | ENST00000412876 | 237 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | LINC00894-201 | ENST00000413076 | 403 nt | TSL 3 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | OR1AA1P-201 | ENST00000419597 | 916 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | ATP5F1P1-201 | ENST00000433775 | 569 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC005019.1-201 | ENST00000436455 | 431 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | COX7BP2-201 | ENST00000437976 | 242 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AL161937.1-201 | ENST00000444478 | 425 nt | TSL 3 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | Z73417.1-201 | ENST00000447373 | 778 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | SLC31A1P1-201 | ENST00000451221 | 567 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RN7SL594P-201 | ENST00000470590 | 287 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RN7SL601P-201 | ENST00000471221 | 293 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC084357.1-201 | ENST00000473404 | 255 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC138057.1-201 | ENST00000497258 | 696 nt | TSL 3 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | LINC01327-201 | ENST00000498413 | 535 nt | TSL 3 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC091951.3-201 | ENST00000504093 | 246 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC008243.1-202 | ENST00000506527 | 481 nt | TSL 5 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | HMGB1P28-201 | ENST00000507778 | 552 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC116353.3-201 | ENST00000511215 | 249 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | LINC01216-201 | ENST00000515728 | 824 nt | TSL 5 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | RNU2-27P-201 | ENST00000516185 | 142 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | CDKL3-207 | ENST00000521755 | 586 nt | TSL 5 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | SLC2A13P1-201 | ENST00000531560 | 322 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AP003170.4-201 | ENST00000543486 | 586 nt | TSL 3 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | OR6C73P-201 | ENST00000546432 | 358 nt | BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | AC117377.1-201 | ENST00000547633 | 1038 nt | TSL 1 (best) BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | LINC02329-201 | ENST00000554753 | 511 nt | TSL 5 BASIC | 3.49 | □□□□□ -1.85 | | |
| CNTN1 | Q12860 | LARP7P2-201 | ENST00000575306 | 125 nt | BASIC | 3.49 | □□□□□ -1.85 | | |