Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC091042.1-201ENST00000579213 173 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA4Q00056 BNIP3P10-201ENST00000605360 577 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AP003117.2-201ENST00000606010 545 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AL359697.1-201ENST00000624879 587 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 AL159972.1-201ENST00000625150 448 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC000374.1-201ENST00000434698 1745 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC011460.1-201ENST00000636268 1834 ntBASIC3.97□□□□□ -1.77
HOXA4Q00056 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXA4Q00056 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA4Q00056 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA4Q00056 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA4Q00056 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
HOXA4Q00056 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.96□□□□□ -1.77
HOXA4Q00056 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.77
HOXA4Q00056 AC010266.2-201ENST00000564741 3255 ntBASIC3.96□□□□□ -1.77
HOXA4Q00056 RNU6-451P-201ENST00000362921 107 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 RNA5SP505-201ENST00000364748 108 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 Y_RNA.279-201ENST00000364763 95 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 RNU6-359P-201ENST00000365466 108 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
HOXA4Q00056 SNORA69-201ENST00000383895 132 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 MIR1-2-201ENST00000384961 85 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 MIR659-201ENST00000384963 97 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXA4Q00056 AL592291.1-201ENST00000403830 352 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 OR9R1P-201ENST00000412200 877 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 SNRPEP10-201ENST00000420249 274 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 RPL30P3-201ENST00000424262 333 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA4Q00056 UBE2V1P13-201ENST00000436983 439 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA4Q00056 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA4Q00056 RPS20P20-201ENST00000460498 340 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 COX7A2P2-201ENST00000505291 250 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA4Q00056 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA4Q00056 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA4Q00056 RNA5SP401-201ENST00000515920 127 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 SCARNA24.1-201ENST00000516465 137 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 IGKV2D-36-201ENST00000518643 226 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA4Q00056 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA4Q00056 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA4Q00056 OR5AN2P-201ENST00000534535 896 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA4Q00056 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA4Q00056 GLYCAM1-201ENST00000546596 285 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 SETP2-201ENST00000553886 926 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA4Q00056 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.96□□□□□ -1.78
HOXA4Q00056 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA4Q00056 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA4Q00056 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA4Q00056 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA4Q00056 AC007566.2-201ENST00000603642 413 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 AL391358.1-201ENST00000605342 190 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
HOXA4Q00056 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA4Q00056 Z95327.2-201ENST00000414579 1873 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 AC009902.3-201ENST00000606235 2172 ntBASIC3.96□□□□□ -1.78
HOXA4Q00056 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA4Q00056 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA4Q00056 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 AC114546.3-201ENST00000623582 1734 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AL731566.1-201ENST00000620490 1937 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 CKAP2P1-201ENST00000555477 2049 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 ZNF680P1-201ENST00000436625 1469 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 RNVU1-6-201ENST00000364688 164 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA4Q00056 U3.29-201ENST00000391296 212 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AL080315.1-201ENST00000406055 466 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 RNU6-1068P-201ENST00000410958 103 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXA4Q00056 RPL31P2-201ENST00000413849 377 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXA4Q00056 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXA4Q00056 EZH2P1-201ENST00000431167 291 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 GPR143P-201ENST00000434155 205 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 ZDHHC20P1-204ENST00000435787 423 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 TIMM9P1-201ENST00000436122 256 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 AC006466.1-201ENST00000438721 289 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXA4Q00056 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXA4Q00056 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXA4Q00056 SNRPGP6-201ENST00000451124 220 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 ELOCP23-201ENST00000452014 332 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 BX276092.4-201ENST00000452056 248 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 RPS5P7-201ENST00000456664 608 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 RPS29P33-201ENST00000456717 146 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 UBDP1-202ENST00000457888 382 ntBASIC3.95□□□□□ -1.78
HOXA4Q00056 MTCO2P29-201ENST00000465212 189 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms