Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
FOXA1P55317 TAB3P1-202ENST00000452645 1634 ntBASIC2.56□□□□□ -2
FOXA1P55317 AC092435.3-201ENST00000565538 3654 ntBASIC2.56□□□□□ -2
FOXA1P55317 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
FOXA1P55317 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.55□□□□□ -2
FOXA1P55317 GNG5P1-201ENST00000255500 204 ntBASIC2.55□□□□□ -2
FOXA1P55317 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
FOXA1P55317 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.55□□□□□ -2
FOXA1P55317 AGR3-202ENST00000402239 563 ntTSL 2 BASIC2.55□□□□□ -2
FOXA1P55317 RPL23AP47-201ENST00000408017 460 ntBASIC2.55□□□□□ -2
FOXA1P55317 RNU2-21P-201ENST00000410368 188 ntBASIC2.55□□□□□ -2
FOXA1P55317 RNA5SP21-201ENST00000410917 96 ntBASIC2.55□□□□□ -2
FOXA1P55317 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC2.55□□□□□ -2
FOXA1P55317 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC2.55□□□□□ -2
FOXA1P55317 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC2.55□□□□□ -2
FOXA1P55317 AC087499.2-201ENST00000432861 149 ntBASIC2.55□□□□□ -2
FOXA1P55317 AC068135.1-201ENST00000446164 246 ntBASIC2.55□□□□□ -2
FOXA1P55317 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.55□□□□□ -2
FOXA1P55317 AP001486.1-201ENST00000463339 476 ntBASIC2.55□□□□□ -2
FOXA1P55317 RPS27AP1-201ENST00000475545 471 ntBASIC2.55□□□□□ -2
FOXA1P55317 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC2.55□□□□□ -2
FOXA1P55317 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.55□□□□□ -2
FOXA1P55317 TBCAP3-201ENST00000512475 312 ntBASIC2.55□□□□□ -2
FOXA1P55317 SNORA31.26-201ENST00000517250 137 ntBASIC2.55□□□□□ -2
FOXA1P55317 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC2.55□□□□□ -2
FOXA1P55317 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.55□□□□□ -2
FOXA1P55317 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.55□□□□□ -2
FOXA1P55317 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.55□□□□□ -2
FOXA1P55317 C1DP5-201ENST00000525775 383 ntBASIC2.55□□□□□ -2
FOXA1P55317 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.55□□□□□ -2
FOXA1P55317 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC2.55□□□□□ -2
FOXA1P55317 AC096947.1-201ENST00000603233 470 ntBASIC2.55□□□□□ -2
FOXA1P55317 AL133393.1-201ENST00000603277 287 ntBASIC2.55□□□□□ -2
FOXA1P55317 MIR6864-201ENST00000617935 70 ntBASIC2.55□□□□□ -2
FOXA1P55317 AC022079.2-201ENST00000619739 566 ntBASIC2.55□□□□□ -2
FOXA1P55317 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.55□□□□□ -2
FOXA1P55317 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.55□□□□□ -2
FOXA1P55317 MTND5P11-201ENST00000511037 1812 ntBASIC2.54□□□□□ -2
FOXA1P55317 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA1P55317 AC104446.1-201ENST00000613728 1321 ntBASIC2.54□□□□□ -2
FOXA1P55317 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.54□□□□□ -2
FOXA1P55317 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.54□□□□□ -2
FOXA1P55317 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.54□□□□□ -2
FOXA1P55317 RNU6-796P-201ENST00000391086 107 ntBASIC2.54□□□□□ -2
FOXA1P55317 SNORA26.7-201ENST00000391288 122 ntBASIC2.54□□□□□ -2
FOXA1P55317 DNAJC19P6-201ENST00000401853 280 ntBASIC2.54□□□□□ -2
FOXA1P55317 HMGB3P31-201ENST00000413333 595 ntBASIC2.54□□□□□ -2
FOXA1P55317 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC2.54□□□□□ -2
FOXA1P55317 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC2.54□□□□□ -2
FOXA1P55317 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.54□□□□□ -2
FOXA1P55317 PSMA2P3-201ENST00000429685 675 ntBASIC2.54□□□□□ -2
FOXA1P55317 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.54□□□□□ -2
FOXA1P55317 AC006994.1-201ENST00000438212 839 ntBASIC2.54□□□□□ -2
FOXA1P55317 HMGB1P12-201ENST00000438594 598 ntBASIC2.54□□□□□ -2
FOXA1P55317 TRIM60P18-201ENST00000441518 828 ntBASIC2.54□□□□□ -2
FOXA1P55317 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.54□□□□□ -2
FOXA1P55317 HMGB1P48-201ENST00000446155 598 ntBASIC2.54□□□□□ -2
FOXA1P55317 NANOGNBP1-201ENST00000448444 480 ntBASIC2.54□□□□□ -2
FOXA1P55317 AL500527.1-201ENST00000448532 255 ntBASIC2.54□□□□□ -2
FOXA1P55317 MRPL35P4-201ENST00000453682 566 ntBASIC2.54□□□□□ -2
FOXA1P55317 AC146507.1-201ENST00000468335 354 ntBASIC2.54□□□□□ -2
FOXA1P55317 AL049873.1-201ENST00000480540 376 ntBASIC2.54□□□□□ -2
FOXA1P55317 AC080014.1-201ENST00000496877 1201 ntBASIC2.54□□□□□ -2
FOXA1P55317 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC2.54□□□□□ -2
FOXA1P55317 AC008565.1-201ENST00000509046 885 ntBASIC2.54□□□□□ -2
FOXA1P55317 AC133963.2-201ENST00000513686 578 ntBASIC2.54□□□□□ -2
FOXA1P55317 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.54□□□□□ -2
FOXA1P55317 AC083923.1-201ENST00000523708 376 ntBASIC2.54□□□□□ -2
FOXA1P55317 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.54□□□□□ -2
FOXA1P55317 AC113192.3-201ENST00000529152 742 ntBASIC2.54□□□□□ -2
FOXA1P55317 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA1P55317 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.54□□□□□ -2
FOXA1P55317 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.54□□□□□ -2
FOXA1P55317 OR6C73P-201ENST00000546432 358 ntBASIC2.54□□□□□ -2
FOXA1P55317 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC2.54□□□□□ -2
FOXA1P55317 AL160237.3-201ENST00000604114 1013 ntBASIC2.54□□□□□ -2
FOXA1P55317 KATNBL1P5-201ENST00000605015 517 ntBASIC2.54□□□□□ -2
FOXA1P55317 STMN1P1-201ENST00000617809 440 ntBASIC2.54□□□□□ -2
FOXA1P55317 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.54□□□□□ -2
FOXA1P55317 MTND5P3-201ENST00000438536 1800 ntBASIC2.54□□□□□ -2
FOXA1P55317 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.53□□□□□ -2
FOXA1P55317 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
FOXA1P55317 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
FOXA1P55317 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.53□□□□□ -2
FOXA1P55317 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.53□□□□□ -2
FOXA1P55317 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
FOXA1P55317 SNORA25.6-201ENST00000364121 118 ntBASIC2.53□□□□□ -2
FOXA1P55317 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
FOXA1P55317 AL357078.2-201ENST00000416486 427 ntBASIC2.53□□□□□ -2
FOXA1P55317 NUP35P2-201ENST00000416748 943 ntBASIC2.53□□□□□ -2
FOXA1P55317 RPL7P10-201ENST00000417407 739 ntBASIC2.53□□□□□ -2
FOXA1P55317 FAM204CP-201ENST00000424489 642 ntBASIC2.53□□□□□ -2
FOXA1P55317 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.53□□□□□ -2
FOXA1P55317 CKS1BP5-201ENST00000434172 273 ntBASIC2.53□□□□□ -2
FOXA1P55317 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.53□□□□□ -2
FOXA1P55317 AC011816.1-201ENST00000441346 546 ntBASIC2.53□□□□□ -2
FOXA1P55317 BTBD7P2-201ENST00000441962 620 ntBASIC2.53□□□□□ -2
FOXA1P55317 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.53□□□□□ -2
FOXA1P55317 AC098799.1-201ENST00000504752 800 ntBASIC2.53□□□□□ -2
FOXA1P55317 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms