Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PGAM1P13-201ENST00000507497 754 ntBASIC5.43□□□□□ -1.54
LIG3P49916 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.43□□□□□ -1.54
LIG3P49916 AC017037.2-201ENST00000513850 890 ntBASIC5.43□□□□□ -1.54
LIG3P49916 Y_RNA.665-201ENST00000516177 98 ntBASIC5.43□□□□□ -1.54
LIG3P49916 RNA5SP34-201ENST00000516887 130 ntBASIC5.43□□□□□ -1.54
LIG3P49916 RNA5SP503-201ENST00000517047 117 ntBASIC5.43□□□□□ -1.54
LIG3P49916 HMGB1P40-201ENST00000525121 540 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.43□□□□□ -1.54
LIG3P49916 AP005639.2-201ENST00000527592 928 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AC103843.2-201ENST00000530523 682 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.43□□□□□ -1.54
LIG3P49916 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.43□□□□□ -1.54
LIG3P49916 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5.43□□□□□ -1.54
LIG3P49916 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.43□□□□□ -1.54
LIG3P49916 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.43□□□□□ -1.54
LIG3P49916 MIR4775-201ENST00000581168 75 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AC104687.2-201ENST00000604442 342 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AL022345.1-201ENST00000607292 135 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AL512329.2-201ENST00000607350 548 ntBASIC5.43□□□□□ -1.54
LIG3P49916 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.43□□□□□ -1.54
LIG3P49916 AP001784.1-201ENST00000624107 428 ntBASIC5.43□□□□□ -1.54
LIG3P49916 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.43□□□□□ -1.54
LIG3P49916 AC011493.1-201ENST00000596753 1632 ntBASIC5.43□□□□□ -1.54
LIG3P49916 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.43□□□□□ -1.54
LIG3P49916 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
LIG3P49916 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.43□□□□□ -1.54
LIG3P49916 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.43□□□□□ -1.54
LIG3P49916 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
LIG3P49916 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
LIG3P49916 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LIG3P49916 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 PABPC1P6-201ENST00000445594 1829 ntBASIC5.42□□□□□ -1.54
LIG3P49916 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
LIG3P49916 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
LIG3P49916 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.42□□□□□ -1.54
LIG3P49916 AC009951.1-201ENST00000623674 2614 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC073343.1-201ENST00000328239 651 ntBASIC5.42□□□□□ -1.54
LIG3P49916 RNU6-178P-201ENST00000384631 104 ntBASIC5.42□□□□□ -1.54
LIG3P49916 RNU6-903P-201ENST00000391270 109 ntBASIC5.42□□□□□ -1.54
LIG3P49916 RNA5SP345-201ENST00000410646 108 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.42□□□□□ -1.54
LIG3P49916 OR6C66P-201ENST00000414917 930 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC008065.1-201ENST00000428525 348 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.42□□□□□ -1.54
LIG3P49916 AC024082.2-201ENST00000434771 238 ntBASIC5.42□□□□□ -1.54
LIG3P49916 GEMIN8P3-201ENST00000445417 720 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC016696.1-201ENST00000446949 318 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.42□□□□□ -1.54
LIG3P49916 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC5.42□□□□□ -1.54
LIG3P49916 RPL23AP11-201ENST00000475260 469 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AP000797.2-201ENST00000475768 606 ntBASIC5.42□□□□□ -1.54
LIG3P49916 RN7SL30P-201ENST00000488416 306 ntBASIC5.42□□□□□ -1.54
LIG3P49916 RPS15AP36-201ENST00000492022 382 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC005798.1-201ENST00000513715 387 ntBASIC5.42□□□□□ -1.54
LIG3P49916 NARSP2-201ENST00000518524 679 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.42□□□□□ -1.54
LIG3P49916 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 AP005435.4-201ENST00000529514 284 ntBASIC5.42□□□□□ -1.54
LIG3P49916 OR5B10P-201ENST00000532869 642 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AP004607.2-201ENST00000533949 322 ntBASIC5.42□□□□□ -1.54
LIG3P49916 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC5.42□□□□□ -1.54
LIG3P49916 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC5.42□□□□□ -1.54
LIG3P49916 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.42□□□□□ -1.54
LIG3P49916 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LIG3P49916 AC026464.5-201ENST00000562497 722 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
LIG3P49916 MIR4512-201ENST00000583257 77 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AL355812.1-201ENST00000603215 216 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC5.42□□□□□ -1.54
LIG3P49916 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.42□□□□□ -1.54
LIG3P49916 AC109583.2-201ENST00000617367 129 ntBASIC5.42□□□□□ -1.54
LIG3P49916 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC5.42□□□□□ -1.54
LIG3P49916 uc_338.7-201ENST00000621834 124 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AC073869.8-201ENST00000641806 335 ntBASIC5.42□□□□□ -1.54
LIG3P49916 ZNF736P3Y-201ENST00000428264 1465 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AP004289.2-201ENST00000444413 1457 ntBASIC5.42□□□□□ -1.54
LIG3P49916 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.42□□□□□ -1.54
LIG3P49916 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LIG3P49916 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.42□□□□□ -1.54
LIG3P49916 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIG3P49916 LARP1BP1-201ENST00000506036 1359 ntBASIC5.42□□□□□ -1.54
LIG3P49916 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
LIG3P49916 AL451142.2-201ENST00000429076 2090 ntBASIC5.41□□□□□ -1.54
LIG3P49916 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.41□□□□□ -1.54
LIG3P49916 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIG3P49916 AL139276.1-201ENST00000311910 1001 ntBASIC5.41□□□□□ -1.54
LIG3P49916 Y_RNA.387-201ENST00000383918 102 ntBASIC5.41□□□□□ -1.54
LIG3P49916 RNU6-38P-201ENST00000384085 107 ntBASIC5.41□□□□□ -1.54
LIG3P49916 RNU6-1029P-201ENST00000384109 107 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms