Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.02□□□□□ -1.93
RFX3P48380 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.02□□□□□ -1.93
RFX3P48380 AC244517.1-201ENST00000606030 2086 ntBASIC3.02□□□□□ -1.93
RFX3P48380 AF117829.1-206ENST00000621883 3802 ntBASIC3.02□□□□□ -1.93
RFX3P48380 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.02□□□□□ -1.93
RFX3P48380 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
RFX3P48380 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC009487.2-201ENST00000420969 6821 ntBASIC3.01□□□□□ -1.93
RFX3P48380 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
RFX3P48380 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.01□□□□□ -1.93
RFX3P48380 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
RFX3P48380 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX3P48380 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.01□□□□□ -1.93
RFX3P48380 RNU1-33P-201ENST00000364249 162 ntBASIC3.01□□□□□ -1.93
RFX3P48380 U6.112-201ENST00000384129 70 ntBASIC3.01□□□□□ -1.93
RFX3P48380 MTCO2P31-201ENST00000402702 684 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AL121978.1-201ENST00000402778 359 ntBASIC3.01□□□□□ -1.93
RFX3P48380 RN7SKP111-201ENST00000410349 271 ntBASIC3.01□□□□□ -1.93
RFX3P48380 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX3P48380 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.01□□□□□ -1.93
RFX3P48380 AC006960.1-201ENST00000419980 153 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.01□□□□□ -1.93
RFX3P48380 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX3P48380 RPS6P14-201ENST00000425165 719 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC234064.1-201ENST00000436312 247 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC009969.1-201ENST00000438726 172 ntBASIC3.01□□□□□ -1.93
RFX3P48380 SEPT14P24-201ENST00000447236 180 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.01□□□□□ -1.93
RFX3P48380 NDUFA5P7-201ENST00000452914 242 ntBASIC3.01□□□□□ -1.93
RFX3P48380 VPS26AP1-201ENST00000483197 979 ntBASIC3.01□□□□□ -1.93
RFX3P48380 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
RFX3P48380 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.01□□□□□ -1.93
RFX3P48380 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.01□□□□□ -1.93
RFX3P48380 AC019227.1-201ENST00000526902 510 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX3P48380 MTCO3P24-201ENST00000572729 782 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.01□□□□□ -1.93
RFX3P48380 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.01□□□□□ -1.93
RFX3P48380 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX3P48380 ZNF415P1-201ENST00000582279 1166 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX3P48380 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.01□□□□□ -1.93
RFX3P48380 AC012669.1-201ENST00000603209 283 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC007179.3-201ENST00000604976 235 ntBASIC3.01□□□□□ -1.93
RFX3P48380 AC124312.4-201ENST00000605533 310 ntBASIC3.01□□□□□ -1.93
RFX3P48380 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.01□□□□□ -1.93
RFX3P48380 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.01□□□□□ -1.93
RFX3P48380 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX3P48380 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.01□□□□□ -1.93
RFX3P48380 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.01□□□□□ -1.93
RFX3P48380 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
RFX3P48380 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
RFX3P48380 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
RFX3P48380 MTND5P1-201ENST00000445440 1375 ntBASIC3□□□□□ -1.93
RFX3P48380 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3□□□□□ -1.93
RFX3P48380 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3□□□□□ -1.93
RFX3P48380 MIR208A-201ENST00000362287 71 ntBASIC3□□□□□ -1.93
RFX3P48380 SNORD82-201ENST00000365530 70 ntBASIC3□□□□□ -1.93
RFX3P48380 CRP-202ENST00000368110 667 ntTSL 3 BASIC3□□□□□ -1.93
RFX3P48380 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3□□□□□ -1.93
RFX3P48380 RNU6-207P-201ENST00000384137 107 ntBASIC3□□□□□ -1.93
RFX3P48380 SNORD116-23-201ENST00000384645 92 ntBASIC3□□□□□ -1.93
RFX3P48380 RPL22P22-201ENST00000395439 379 ntBASIC3□□□□□ -1.93
RFX3P48380 RPL21P3-201ENST00000395517 478 ntBASIC3□□□□□ -1.93
RFX3P48380 TAF9BP1-201ENST00000396646 746 ntBASIC3□□□□□ -1.93
RFX3P48380 AL023807.1-201ENST00000407932 359 ntBASIC3□□□□□ -1.93
RFX3P48380 RNU4-65P-201ENST00000410473 140 ntBASIC3□□□□□ -1.93
RFX3P48380 RPS3AP25-201ENST00000411660 793 ntBASIC3□□□□□ -1.93
RFX3P48380 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3□□□□□ -1.93
RFX3P48380 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3□□□□□ -1.93
RFX3P48380 DUTP6-201ENST00000425573 462 ntBASIC3□□□□□ -1.93
RFX3P48380 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3□□□□□ -1.93
RFX3P48380 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3□□□□□ -1.93
RFX3P48380 RPS3AP12-201ENST00000443616 753 ntBASIC3□□□□□ -1.93
RFX3P48380 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3□□□□□ -1.93
RFX3P48380 Z99127.3-201ENST00000448158 395 ntBASIC3□□□□□ -1.93
RFX3P48380 TRBV26-201ENST00000456572 344 ntBASIC3□□□□□ -1.93
RFX3P48380 AC146507.2-201ENST00000460608 476 ntBASIC3□□□□□ -1.93
RFX3P48380 PLGLA-201ENST00000465668 449 ntBASIC3□□□□□ -1.93
RFX3P48380 XACT-201ENST00000468762 497 ntTSL 5 BASIC3□□□□□ -1.93
RFX3P48380 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3□□□□□ -1.93
RFX3P48380 HMGN2P13-201ENST00000476476 274 ntBASIC3□□□□□ -1.93
RFX3P48380 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3□□□□□ -1.93
RFX3P48380 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3□□□□□ -1.93
RFX3P48380 AC118282.2-201ENST00000508739 374 ntBASIC3□□□□□ -1.93
RFX3P48380 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
RFX3P48380 AC048346.1-201ENST00000510247 144 ntBASIC3□□□□□ -1.93
RFX3P48380 RNU5A-7P-201ENST00000515979 116 ntBASIC3□□□□□ -1.93
RFX3P48380 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3□□□□□ -1.93
RFX3P48380 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3□□□□□ -1.93
RFX3P48380 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3□□□□□ -1.93
RFX3P48380 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3□□□□□ -1.93
RFX3P48380 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3□□□□□ -1.93
RFX3P48380 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3□□□□□ -1.93
RFX3P48380 AC005951.1-201ENST00000576706 485 ntBASIC3□□□□□ -1.93
RFX3P48380 AC090666.1-201ENST00000578241 445 ntBASIC3□□□□□ -1.93
RFX3P48380 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3□□□□□ -1.93
RFX3P48380 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3□□□□□ -1.93
RFX3P48380 BDH2P1-201ENST00000602288 736 ntBASIC3□□□□□ -1.93
RFX3P48380 GAS5-AS1-201ENST00000602767 694 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms