Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX2-1P43699 AL645937.1-201ENST00000641739 1652 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
NKX2-1P43699 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NKX2-1P43699 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
NKX2-1P43699 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX2-1P43699 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.36□□□□□ -1.87
NKX2-1P43699 CR383658.2-201ENST00000547576 1525 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.36□□□□□ -1.87
NKX2-1P43699 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 OR5P1P-201ENST00000299512 925 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 OR4K15-201ENST00000305051 1216 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX2-1P43699 OR11H4-201ENST00000315409 1082 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX2-1P43699 Y_RNA.194-201ENST00000363985 102 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 SNORD113.2-201ENST00000364166 89 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 SNORA58B-201ENST00000364259 136 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 RNU6-343P-201ENST00000364709 104 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 RNA5SP235-201ENST00000365411 114 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
NKX2-1P43699 SNORA70F-201ENST00000384142 135 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX2-1P43699 BTF3L4P1-201ENST00000413813 468 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC092447.6-201ENST00000414578 210 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AL137014.1-201ENST00000420490 1226 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX2-1P43699 RPS27AP14-201ENST00000422868 454 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AL365184.2-201ENST00000431139 435 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC109583.1-201ENST00000432156 268 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 MTCO2P16-201ENST00000436962 677 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX2-1P43699 RPL36AP33-201ENST00000450395 310 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX2-1P43699 AL513533.1-201ENST00000453728 415 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 SNRPFP4-201ENST00000456366 242 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 BTF3P5-201ENST00000457252 467 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC231760.1-201ENST00000498002 260 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX2-1P43699 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX2-1P43699 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.36□□□□□ -1.87
NKX2-1P43699 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX2-1P43699 RNA5SP73-201ENST00000516744 108 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 SNORA31.20-201ENST00000517111 133 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX2-1P43699 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NKX2-1P43699 OR5D17P-201ENST00000531492 978 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX2-1P43699 TOMM20P2-201ENST00000540082 421 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.36□□□□□ -1.87
NKX2-1P43699 CR383656.7-201ENST00000548164 174 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX2-1P43699 AC103987.3-201ENST00000582071 292 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 AC073544.2-201ENST00000601155 540 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 MIR6780A-201ENST00000615089 68 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 uc_338.13-201ENST00000618243 179 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC009509.4-201ENST00000619202 509 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
NKX2-1P43699 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
NKX2-1P43699 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 AL353746.1-201ENST00000566293 6881 ntBASIC3.36□□□□□ -1.87
NKX2-1P43699 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX2-1P43699 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX2-1P43699 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX2-1P43699 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX2-1P43699 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
NKX2-1P43699 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.35□□□□□ -1.87
NKX2-1P43699 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX2-1P43699 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX2-1P43699 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX2-1P43699 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX2-1P43699 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX2-1P43699 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX2-1P43699 MIR331-201ENST00000362302 94 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 RNU6-1155P-201ENST00000363554 107 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 RNU6-660P-201ENST00000364566 109 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX2-1P43699 AC007066.1-201ENST00000392902 381 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NKX2-1P43699 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX2-1P43699 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX2-1P43699 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX2-1P43699 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX2-1P43699 AC016907.1-201ENST00000419483 435 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX2-1P43699 UQCRBP1-201ENST00000421129 336 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 BEND7P1-201ENST00000422058 457 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
NKX2-1P43699 AL389915.1-201ENST00000422463 466 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 RPL7AP25-201ENST00000423357 805 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX2-1P43699 RPS3AP54-201ENST00000435535 734 ntBASIC3.35□□□□□ -1.87
NKX2-1P43699 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX2-1P43699 RPL23AP46-201ENST00000438548 490 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms