Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.65□□□□□ -1.82
CUX1P39880 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.65□□□□□ -1.82
CUX1P39880 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
CUX1P39880 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CUX1P39880 AC005539.1-201ENST00000443768 1479 ntBASIC3.65□□□□□ -1.83
CUX1P39880 AC095050.2-201ENST00000510748 1458 ntBASIC3.65□□□□□ -1.83
CUX1P39880 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
CUX1P39880 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.65□□□□□ -1.83
CUX1P39880 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CUX1P39880 SNORA11.4-201ENST00000408823 129 ntBASIC3.65□□□□□ -1.83
CUX1P39880 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CUX1P39880 AC107015.1-201ENST00000466902 747 ntBASIC3.65□□□□□ -1.83
CUX1P39880 RPL23AP42-201ENST00000471152 471 ntBASIC3.65□□□□□ -1.83
CUX1P39880 CCNHP1-201ENST00000513311 678 ntBASIC3.65□□□□□ -1.83
CUX1P39880 AC108729.3-201ENST00000513484 108 ntBASIC3.65□□□□□ -1.83
CUX1P39880 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.65□□□□□ -1.83
CUX1P39880 ZKSCAN7P1-201ENST00000543668 673 ntBASIC3.65□□□□□ -1.83
CUX1P39880 MTCO3P13-201ENST00000577757 781 ntBASIC3.65□□□□□ -1.83
CUX1P39880 OR4K7P-201ENST00000580232 945 ntBASIC3.65□□□□□ -1.83
CUX1P39880 AC084035.1-201ENST00000634543 607 ntBASIC3.65□□□□□ -1.83
CUX1P39880 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CUX1P39880 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CUX1P39880 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CUX1P39880 RNA5SP213-201ENST00000391031 106 ntBASIC3.64□□□□□ -1.83
CUX1P39880 MUPP-201ENST00000438111 566 ntBASIC3.64□□□□□ -1.83
CUX1P39880 AC004866.2-201ENST00000438285 481 ntBASIC3.64□□□□□ -1.83
CUX1P39880 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.64□□□□□ -1.83
CUX1P39880 CEACAMP4-201ENST00000457676 421 ntBASIC3.64□□□□□ -1.83
CUX1P39880 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.64□□□□□ -1.83
CUX1P39880 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.64□□□□□ -1.83
CUX1P39880 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.64□□□□□ -1.83
CUX1P39880 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.64□□□□□ -1.83
CUX1P39880 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.64□□□□□ -1.83
CUX1P39880 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.64□□□□□ -1.83
CUX1P39880 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.64□□□□□ -1.83
CUX1P39880 LRRC77P-213ENST00000637727 880 ntBASIC3.64□□□□□ -1.83
CUX1P39880 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.63□□□□□ -1.83
CUX1P39880 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CUX1P39880 AC025125.1-201ENST00000624743 1922 ntBASIC3.63□□□□□ -1.83
CUX1P39880 AC048351.1-201ENST00000420064 602 ntBASIC3.63□□□□□ -1.83
CUX1P39880 AL357520.1-201ENST00000441557 453 ntBASIC3.63□□□□□ -1.83
CUX1P39880 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.63□□□□□ -1.83
CUX1P39880 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.63□□□□□ -1.83
CUX1P39880 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.63□□□□□ -1.83
CUX1P39880 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.63□□□□□ -1.83
CUX1P39880 AC009570.1-201ENST00000609599 745 ntBASIC3.63□□□□□ -1.83
CUX1P39880 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.63□□□□□ -1.83
CUX1P39880 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.63□□□□□ -1.83
CUX1P39880 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC3.63□□□□□ -1.83
CUX1P39880 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CUX1P39880 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
CUX1P39880 NSRP1P1-201ENST00000444067 1693 ntBASIC3.62□□□□□ -1.83
CUX1P39880 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.62□□□□□ -1.83
CUX1P39880 AL359893.1-201ENST00000447628 1580 ntBASIC3.62□□□□□ -1.83
CUX1P39880 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.62□□□□□ -1.83
CUX1P39880 SNORA26.9-201ENST00000391322 122 ntBASIC3.62□□□□□ -1.83
CUX1P39880 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CUX1P39880 AL354719.1-201ENST00000406535 843 ntBASIC3.62□□□□□ -1.83
CUX1P39880 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.62□□□□□ -1.83
CUX1P39880 AIMP1P1-201ENST00000418670 937 ntBASIC3.62□□□□□ -1.83
CUX1P39880 AL009174.1-201ENST00000426577 416 ntBASIC3.62□□□□□ -1.83
CUX1P39880 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.62□□□□□ -1.83
CUX1P39880 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.62□□□□□ -1.83
CUX1P39880 AC107918.3-201ENST00000533272 382 ntBASIC3.62□□□□□ -1.83
CUX1P39880 AC078814.3-201ENST00000553036 491 ntBASIC3.62□□□□□ -1.83
CUX1P39880 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.62□□□□□ -1.83
CUX1P39880 AP003117.2-201ENST00000606010 545 ntBASIC3.62□□□□□ -1.83
CUX1P39880 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CUX1P39880 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.62□□□□□ -1.83
CUX1P39880 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.62□□□□□ -1.83
CUX1P39880 AC091152.2-201ENST00000591628 2569 ntBASIC3.62□□□□□ -1.83
CUX1P39880 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
CUX1P39880 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
CUX1P39880 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.62□□□□□ -1.83
CUX1P39880 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CUX1P39880 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CUX1P39880 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.61□□□□□ -1.83
CUX1P39880 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CUX1P39880 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CUX1P39880 AC009414.1-201ENST00000427200 443 ntBASIC3.61□□□□□ -1.83
CUX1P39880 AL445646.1-201ENST00000431784 216 ntBASIC3.61□□□□□ -1.83
CUX1P39880 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.61□□□□□ -1.83
CUX1P39880 YWHAEP7-203ENST00000622054 312 ntBASIC3.61□□□□□ -1.83
CUX1P39880 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CUX1P39880 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.61□□□□□ -1.83
CUX1P39880 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CUX1P39880 RNU1-17P-201ENST00000363022 152 ntBASIC3.6□□□□□ -1.83
CUX1P39880 Y_RNA.140-201ENST00000363474 103 ntBASIC3.6□□□□□ -1.83
CUX1P39880 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.6□□□□□ -1.83
CUX1P39880 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CUX1P39880 RNU6-14P-201ENST00000384630 106 ntBASIC3.6□□□□□ -1.83
CUX1P39880 RPS6P12-201ENST00000432491 726 ntBASIC3.6□□□□□ -1.83
CUX1P39880 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.6□□□□□ -1.83
CUX1P39880 RPL36AP6-201ENST00000435770 321 ntBASIC3.6□□□□□ -1.83
CUX1P39880 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CUX1P39880 AL118520.1-201ENST00000450770 291 ntBASIC3.6□□□□□ -1.83
CUX1P39880 RN7SKP210-201ENST00000459176 261 ntBASIC3.6□□□□□ -1.83
CUX1P39880 AC004263.1-201ENST00000479327 332 ntBASIC3.6□□□□□ -1.83
CUX1P39880 RPL38P4-201ENST00000502376 214 ntBASIC3.6□□□□□ -1.83
CUX1P39880 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms