Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CRYM-AS1-204ENST00000637983 556 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SMARCA1P28370 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SMARCA1P28370 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.65
SMARCA1P28370 AC008725.1-201ENST00000605123 2263 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SMARCA1P28370 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.77□□□□□ -1.65
SMARCA1P28370 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.77□□□□□ -1.65
SMARCA1P28370 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC027514.1-201ENST00000588561 1603 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AC006378.2-201ENST00000623178 2476 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.77□□□□□ -1.65
SMARCA1P28370 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
SMARCA1P28370 RN7SKP227-201ENST00000364445 330 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RNU6-517P-201ENST00000384362 110 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RNU6-769P-201ENST00000384407 104 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 Y_RNA.516-201ENST00000384541 124 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AL024474.1-201ENST00000404655 591 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AL356967.1-201ENST00000406305 431 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RNA5SP317-201ENST00000410176 116 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RN7SKP266-201ENST00000410232 287 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RNA5SP311-201ENST00000411290 116 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 UBE2V1P10-201ENST00000414685 269 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 ELOCP17-201ENST00000414751 326 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RPS12P23-201ENST00000419579 400 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AL356583.2-201ENST00000426536 280 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AC104651.1-201ENST00000427559 735 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC4.77□□□□□ -1.65
SMARCA1P28370 MTND1P4-201ENST00000435196 415 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 Z74696.2-201ENST00000436514 498 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RPL23AP74-201ENST00000437246 471 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 HLA-N-201ENST00000437516 135 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC069285.2-201ENST00000440210 275 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.77□□□□□ -1.65
SMARCA1P28370 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.77□□□□□ -1.65
SMARCA1P28370 BX322784.1-201ENST00000455793 1077 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 BTF3P5-201ENST00000457252 467 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RPL38P1-201ENST00000460914 211 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 PABPC1P3-201ENST00000469174 459 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AC006517.1-201ENST00000480485 328 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 FAM172BP-201ENST00000487497 1089 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RN7SL271P-201ENST00000487601 295 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AC107401.1-201ENST00000503426 685 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RPL37P25-201ENST00000507308 276 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RNA5SP315-201ENST00000516340 116 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RNA5SP312-201ENST00000517068 116 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC090281.1-201ENST00000523019 276 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 OR5M7P-201ENST00000526140 972 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.77□□□□□ -1.65
SMARCA1P28370 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC092470.1-201ENST00000546187 132 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC245505.1-201ENST00000556398 224 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 MIR5186-201ENST00000577504 120 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 LLPHP1-201ENST00000603571 367 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.77□□□□□ -1.65
SMARCA1P28370 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 AC104010.1-201ENST00000616889 150 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 AC112484.5-201ENST00000624189 228 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 RNA5SP196-201ENST00000625967 102 ntBASIC4.77□□□□□ -1.65
SMARCA1P28370 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.77□□□□□ -1.65
SMARCA1P28370 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SMARCA1P28370 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.77□□□□□ -1.65
SMARCA1P28370 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SMARCA1P28370 NMD3P1-201ENST00000439704 1488 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AC092447.7-201ENST00000422212 1621 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.76□□□□□ -1.65
SMARCA1P28370 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SMARCA1P28370 OR11H4-201ENST00000315409 1082 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.76□□□□□ -1.65
SMARCA1P28370 SNORA37-201ENST00000384504 129 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 MIR1305-201ENST00000408300 86 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.76□□□□□ -1.65
SMARCA1P28370 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.76□□□□□ -1.65
SMARCA1P28370 HMGN1P14-201ENST00000412459 517 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC4.76□□□□□ -1.65
SMARCA1P28370 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.76□□□□□ -1.65
SMARCA1P28370 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 FNDC3CP-201ENST00000420795 1155 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 AC004975.1-201ENST00000428733 208 ntBASIC4.76□□□□□ -1.65
SMARCA1P28370 RPS27AP12-201ENST00000429552 465 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms