Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR6733-201ENST00000635723 61 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL5A3P25940 AL136964.1-201ENST00000622038 2990 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 OR4G2P-202ENST00000641004 1759 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
COL5A3P25940 RLIMP2-201ENST00000427891 1563 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.82□□□□□ -1.96
COL5A3P25940 SNORA80E-201ENST00000384744 137 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
COL5A3P25940 RPL7P53-201ENST00000421245 739 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 USP9YP7-201ENST00000436723 430 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC2.82□□□□□ -1.96
COL5A3P25940 NPM1P49-201ENST00000448027 714 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 USP9YP32-201ENST00000452432 430 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 RNA5SP200-201ENST00000516360 103 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 SCARNA16.3-201ENST00000516595 184 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.82□□□□□ -1.96
COL5A3P25940 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.82□□□□□ -1.96
COL5A3P25940 PHKBP1-201ENST00000450951 1951 ntBASIC2.82□□□□□ -1.96
COL5A3P25940 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL5A3P25940 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL5A3P25940 AC091152.2-201ENST00000591628 2569 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL5A3P25940 AL512646.1-201ENST00000269395 1077 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 SNORA51.4-201ENST00000364993 124 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 AL589994.1-201ENST00000404962 340 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 AC007390.1-201ENST00000415722 356 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC2.81□□□□□ -1.96
COL5A3P25940 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.81□□□□□ -1.96
COL5A3P25940 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.81□□□□□ -1.96
COL5A3P25940 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.81□□□□□ -1.96
COL5A3P25940 AC004263.1-201ENST00000479327 332 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 RN7SL283P-201ENST00000489055 303 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 RPS27P27-201ENST00000498779 255 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL5A3P25940 MTCYBP28-201ENST00000566728 1132 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 AC012182.1-201ENST00000570133 895 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 AL645944.1-201ENST00000603857 493 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 GMCL1P2-201ENST00000605230 823 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 AC096586.2-201ENST00000610260 441 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 AC104237.2-201ENST00000612456 443 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 AC009950.2-201ENST00000636548 183 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 MIR219B-201ENST00000637023 88 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 LRRC77P-213ENST00000637727 880 ntBASIC2.81□□□□□ -1.96
COL5A3P25940 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL5A3P25940 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL5A3P25940 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL5A3P25940 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC2.8□□□□□ -1.96
COL5A3P25940 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
COL5A3P25940 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL5A3P25940 SNORD21-201ENST00000383953 95 ntBASIC2.8□□□□□ -1.96
COL5A3P25940 MIR221-201ENST00000385135 110 ntBASIC2.8□□□□□ -1.96
COL5A3P25940 GSTA12P-201ENST00000402398 508 ntBASIC2.8□□□□□ -1.96
COL5A3P25940 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC2.8□□□□□ -1.96
COL5A3P25940 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.8□□□□□ -1.96
COL5A3P25940 AC116337.1-201ENST00000509680 687 ntBASIC2.8□□□□□ -1.96
COL5A3P25940 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.8□□□□□ -1.96
COL5A3P25940 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.8□□□□□ -1.96
COL5A3P25940 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC2.8□□□□□ -1.96
COL5A3P25940 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.8□□□□□ -1.96
COL5A3P25940 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.8□□□□□ -1.96
COL5A3P25940 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL5A3P25940 AC009487.2-201ENST00000420969 6821 ntBASIC2.8□□□□□ -1.96
COL5A3P25940 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
COL5A3P25940 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
COL5A3P25940 AC093151.1-201ENST00000427711 313 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 AL390023.1-201ENST00000428836 262 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 AC098826.1-201ENST00000433943 471 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 RPL7P52-201ENST00000449200 742 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC2.79□□□□□ -1.96
COL5A3P25940 AC010378.1-201ENST00000619270 362 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
COL5A3P25940 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL5A3P25940 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2.79□□□□□ -1.96
COL5A3P25940 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL5A3P25940 AL121882.1-201ENST00000422893 417 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 SEC63P1-201ENST00000425785 1258 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC2.79□□□□□ -1.96
COL5A3P25940 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.79□□□□□ -1.96
COL5A3P25940 AL713998.2-201ENST00000604538 1198 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 VN1R9P-201ENST00000614184 867 ntBASIC2.79□□□□□ -1.96
COL5A3P25940 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A3P25940 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
COL5A3P25940 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A3P25940 AC025125.1-201ENST00000624743 1922 ntBASIC2.78□□□□□ -1.96
COL5A3P25940 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.78□□□□□ -1.96
COL5A3P25940 MIR21-201ENST00000362134 72 ntBASIC2.78□□□□□ -1.96
COL5A3P25940 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL5A3P25940 NDUFB4P5-201ENST00000415445 361 ntBASIC2.78□□□□□ -1.96
COL5A3P25940 AL121578.1-201ENST00000428051 892 ntBASIC2.78□□□□□ -1.96
COL5A3P25940 RNA5SP445-201ENST00000515889 115 ntBASIC2.78□□□□□ -1.96
COL5A3P25940 RNU6-943P-201ENST00000516960 98 ntBASIC2.78□□□□□ -1.96
COL5A3P25940 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC2.78□□□□□ -1.96
COL5A3P25940 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.78□□□□□ -1.96
COL5A3P25940 AC002076.2-201ENST00000617362 122 ntBASIC2.78□□□□□ -1.96
COL5A3P25940 AC080128.1-201ENST00000474389 1917 ntBASIC2.78□□□□□ -1.97
COL5A3P25940 DCAF13P3-201ENST00000561147 1334 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 CR382285.2-201ENST00000624662 1495 ntBASIC2.77□□□□□ -1.97
COL5A3P25940 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms