Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.17□□□□□ -1.9
SDC1P18827 AL132657.2-201ENST00000564417 358 ntBASIC3.17□□□□□ -1.9
SDC1P18827 AC015917.1-201ENST00000579654 510 ntBASIC3.17□□□□□ -1.9
SDC1P18827 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.17□□□□□ -1.9
SDC1P18827 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 AC021749.1-201ENST00000604322 607 ntBASIC3.17□□□□□ -1.9
SDC1P18827 AL356321.1-201ENST00000621360 228 ntBASIC3.17□□□□□ -1.9
SDC1P18827 AC243312.2-201ENST00000623340 601 ntBASIC3.17□□□□□ -1.9
SDC1P18827 AC073476.4-201ENST00000628409 72 ntBASIC3.17□□□□□ -1.9
SDC1P18827 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SDC1P18827 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
SDC1P18827 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SDC1P18827 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SDC1P18827 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SDC1P18827 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC1P18827 MTCO1P23-201ENST00000415223 1526 ntBASIC3.16□□□□□ -1.9
SDC1P18827 RPL7P26-201ENST00000333817 754 ntBASIC3.16□□□□□ -1.9
SDC1P18827 SNRPEP3-201ENST00000338402 276 ntBASIC3.16□□□□□ -1.9
SDC1P18827 RNU6-216P-201ENST00000363282 104 ntBASIC3.16□□□□□ -1.9
SDC1P18827 SNORD56.3-201ENST00000363507 71 ntBASIC3.16□□□□□ -1.9
SDC1P18827 RNU6-335P-201ENST00000364563 113 ntBASIC3.16□□□□□ -1.9
SDC1P18827 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.16□□□□□ -1.9
SDC1P18827 RNU6-629P-201ENST00000384061 103 ntBASIC3.16□□□□□ -1.9
SDC1P18827 U3.29-201ENST00000391296 212 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AL590084.1-201ENST00000407885 387 ntBASIC3.16□□□□□ -1.9
SDC1P18827 RNA5SP229-201ENST00000410809 99 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SDC1P18827 AC245291.1-201ENST00000419501 328 ntBASIC3.16□□□□□ -1.9
SDC1P18827 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.16□□□□□ -1.9
SDC1P18827 RPS15AP6-201ENST00000420703 385 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC006548.1-201ENST00000427470 102 ntBASIC3.16□□□□□ -1.9
SDC1P18827 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.16□□□□□ -1.9
SDC1P18827 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.16□□□□□ -1.9
SDC1P18827 HSPD1P21-201ENST00000436541 245 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.16□□□□□ -1.9
SDC1P18827 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SDC1P18827 AC007327.1-201ENST00000447461 264 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AL133547.1-201ENST00000448546 220 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC1P18827 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.16□□□□□ -1.9
SDC1P18827 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SDC1P18827 AC078785.3-201ENST00000476607 425 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.16□□□□□ -1.9
SDC1P18827 RNU1-143P-201ENST00000516296 146 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.16□□□□□ -1.9
SDC1P18827 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.16□□□□□ -1.9
SDC1P18827 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.16□□□□□ -1.9
SDC1P18827 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.16□□□□□ -1.9
SDC1P18827 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
SDC1P18827 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC1P18827 AP001269.3-201ENST00000588718 329 ntBASIC3.16□□□□□ -1.9
SDC1P18827 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.16□□□□□ -1.9
SDC1P18827 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC1P18827 AC009974.1-201ENST00000608881 455 ntBASIC3.16□□□□□ -1.9
SDC1P18827 U1.23-201ENST00000610293 146 ntBASIC3.16□□□□□ -1.9
SDC1P18827 uc_338.1-201ENST00000612113 180 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC107075.1-201ENST00000613695 314 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AL050303.3-201ENST00000613704 284 ntBASIC3.16□□□□□ -1.9
SDC1P18827 RNU1-68P-201ENST00000615382 146 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC092650.2-201ENST00000619984 902 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC022509.4-201ENST00000621404 572 ntBASIC3.16□□□□□ -1.9
SDC1P18827 U1.39-201ENST00000621562 146 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC039056.2-201ENST00000622261 511 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AL078595.3-201ENST00000623815 1166 ntBASIC3.16□□□□□ -1.9
SDC1P18827 CR381572.1-201ENST00000625098 102 ntBASIC3.16□□□□□ -1.9
SDC1P18827 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC1P18827 AL034408.1-202ENST00000636088 415 ntBASIC3.16□□□□□ -1.9
SDC1P18827 MIR4278-201ENST00000636094 69 ntBASIC3.16□□□□□ -1.9
SDC1P18827 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC1P18827 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.16□□□□□ -1.9
SDC1P18827 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SDC1P18827 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.16□□□□□ -1.9
SDC1P18827 CDR1-202ENST00000625883 1485 ntBASIC3.16□□□□□ -1.9
SDC1P18827 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.9
SDC1P18827 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
SDC1P18827 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.15□□□□□ -1.91
SDC1P18827 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SDC1P18827 SNORA31-201ENST00000362607 130 ntBASIC3.15□□□□□ -1.91
SDC1P18827 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC1P18827 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC1P18827 SNRPEP2-201ENST00000397592 279 ntBASIC3.15□□□□□ -1.91
SDC1P18827 RPL31P1-201ENST00000398116 372 ntBASIC3.15□□□□□ -1.91
SDC1P18827 RN7SKP202-201ENST00000410439 330 ntBASIC3.15□□□□□ -1.91
SDC1P18827 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC1P18827 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.15□□□□□ -1.91
SDC1P18827 AC018644.1-201ENST00000429934 551 ntBASIC3.15□□□□□ -1.91
SDC1P18827 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC1P18827 CST9LP2-201ENST00000437612 320 ntBASIC3.15□□□□□ -1.91
SDC1P18827 ATP5C1P1-201ENST00000441945 895 ntBASIC3.15□□□□□ -1.91
SDC1P18827 Z99127.3-201ENST00000448158 395 ntBASIC3.15□□□□□ -1.91
SDC1P18827 SLC31A1P1-201ENST00000451221 567 ntBASIC3.15□□□□□ -1.91
SDC1P18827 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC1P18827 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC1P18827 AC005921.1-201ENST00000510589 286 ntBASIC3.15□□□□□ -1.91
SDC1P18827 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms