| PTPN2 | P17706 | LINC02146-201 | ENST00000504244 | 509 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | MTCO3P28-201 | ENST00000513351 | 515 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | OCIAD1-AS1-201 | ENST00000513576 | 265 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | HIGD1AP3-201 | ENST00000515857 | 278 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RNU1-95P-201 | ENST00000516357 | 160 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RNU1-128P-201 | ENST00000516704 | 160 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC105031.3-201 | ENST00000524359 | 616 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | OR4A45P-201 | ENST00000529954 | 901 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | CACNA1C-AS4-201 | ENST00000544415 | 735 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | OR7K1P-201 | ENST00000546439 | 926 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL355922.1-201 | ENST00000555624 | 337 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | LINC02345-201 | ENST00000557883 | 766 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC005899.4-201 | ENST00000581915 | 514 nt | TSL 4 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | MIR4637-201 | ENST00000582405 | 84 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC020914.6-201 | ENST00000594327 | 272 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | VN1R92P-201 | ENST00000598511 | 928 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL596327.1-201 | ENST00000603629 | 213 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC105129.3-201 | ENST00000605455 | 485 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | ZRANB2-AS2-218 | ENST00000608360 | 722 nt | TSL 5 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL391497.1-201 | ENST00000608671 | 547 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL159169.3-201 | ENST00000608871 | 561 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | LINC00649-214 | ENST00000609132 | 668 nt | TSL 5 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL356515.1-201 | ENST00000611081 | 415 nt | TSL 3 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | Xist_exon1.1-201 | ENST00000618930 | 85 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RBM12B-AS1-201 | ENST00000623283 | 653 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC092192.1-201 | ENST00000633154 | 1018 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | PLCL2-202 | ENST00000432376 | 3940 nt | APPRIS P3 TSL 1 (best) BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | TIMM9-202 | ENST00000395159 | 1336 nt | APPRIS P1 TSL 1 (best) BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | ELL2P3-201 | ENST00000457883 | 1602 nt | BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | ST7-221 | ENST00000465133 | 2155 nt | TSL 5 BASIC | 4.13 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC020637.1-201 | ENST00000546977 | 1447 nt | TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | PREPL-206 | ENST00000409936 | 5212 nt | APPRIS P1 TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | ZNF285B-201 | ENST00000561698 | 1767 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | TNNI3K-201 | ENST00000326637 | 3001 nt | APPRIS P1 TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC093274.1-201 | ENST00000503488 | 5454 nt | TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | DNAH12-202 | ENST00000351747 | 9542 nt | TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | DGKI-204 | ENST00000453654 | 12928 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | LRMP-201 | ENST00000354454 | 2504 nt | APPRIS P2 TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | IL2-201 | ENST00000226730 | 1029 nt | APPRIS P1 TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RNA5SP119-201 | ENST00000362715 | 117 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL031577.2-201 | ENST00000404133 | 280 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | Z85994.1-201 | ENST00000406912 | 606 nt | TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RHEBP3-201 | ENST00000411920 | 351 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RPL31P2-201 | ENST00000413849 | 377 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL024509.3-201 | ENST00000413898 | 745 nt | TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | LINC01423-201 | ENST00000414189 | 608 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | SPATA17-AS1-201 | ENST00000415765 | 420 nt | TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC092647.1-201 | ENST00000420654 | 287 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC093581.1-202 | ENST00000430890 | 391 nt | TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | MTND4P6-201 | ENST00000438297 | 472 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | ATP2B2-IT1-201 | ENST00000440152 | 472 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL157359.2-201 | ENST00000440372 | 784 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | KATNBL1P3-201 | ENST00000443475 | 909 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC098484.1-201 | ENST00000447572 | 484 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL589935.1-212 | ENST00000450998 | 525 nt | TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | THAP6-205 | ENST00000504190 | 1004 nt | TSL 1 (best) BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC006499.2-201 | ENST00000513470 | 337 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RNU6-352P-201 | ENST00000516908 | 107 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC104986.1-201 | ENST00000517978 | 436 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | CTHRC1-204 | ENST00000520880 | 560 nt | TSL 4 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL353699.1-201 | ENST00000529078 | 365 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AP002373.1-201 | ENST00000544347 | 729 nt | APPRIS P1 TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL133166.1-202 | ENST00000550975 | 565 nt | TSL 4 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL133279.1-201 | ENST00000553487 | 473 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC026474.1-201 | ENST00000562422 | 428 nt | TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC011260.1-201 | ENST00000578420 | 472 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | LINC01893-201 | ENST00000581750 | 479 nt | TSL 3 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC090616.5-202 | ENST00000582111 | 297 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC104662.1-201 | ENST00000604448 | 511 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | PRKCQ-AS1-207 | ENST00000607996 | 531 nt | TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | C8orf59-207 | ENST00000611854 | 563 nt | APPRIS P1 TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC073530.2-201 | ENST00000623987 | 261 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL356596.1-201 | ENST00000624230 | 379 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | TEX41-300 | ENST00000631048 | 69 nt | TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | PCMTD1P7-201 | ENST00000634506 | 357 nt | BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC046195.1-201 | ENST00000518973 | 4171 nt | TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | TRMT10A-203 | ENST00000394877 | 3516 nt | APPRIS P1 TSL 2 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | PLS3-203 | ENST00000420625 | 3150 nt | TSL 5 BASIC | 4.12 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | ZNF345-214 | ENST00000612719 | 2938 nt | APPRIS P1 TSL 4 BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | SPATA31D2P-201 | ENST00000429999 | 4388 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | GYPE-201 | ENST00000358615 | 1684 nt | APPRIS P1 TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | C8orf59-201 | ENST00000321777 | 325 nt | TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | SNORD46.1-201 | ENST00000364139 | 104 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RNU6-660P-201 | ENST00000364566 | 109 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | Y_RNA.302-201 | ENST00000364997 | 102 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | U8.11-201 | ENST00000384699 | 133 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | U8.12-201 | ENST00000384701 | 133 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | HIGD1C-201 | ENST00000398455 | 371 nt | APPRIS P1 TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL024474.1-201 | ENST00000404655 | 591 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | MOB4-205 | ENST00000409916 | 829 nt | TSL 3 BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RNA5SP306-201 | ENST00000411087 | 107 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | RPL7AP73-201 | ENST00000413490 | 353 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | OFD1P11Y-201 | ENST00000418213 | 1177 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | LINC00382-201 | ENST00000427918 | 890 nt | TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | MYCBP2-AS2-201 | ENST00000428716 | 428 nt | TSL 5 BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | ZYG11AP1-201 | ENST00000430329 | 837 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | ISCA1P2-201 | ENST00000438679 | 421 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AL117351.1-201 | ENST00000438864 | 766 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | AC118469.1-201 | ENST00000442943 | 488 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| PTPN2 | P17706 | HMGN2P21-201 | ENST00000447764 | 270 nt | BASIC | 4.11 | □□□□□ -1.75 | | |