Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GTF2IP8-201ENST00000560687 584 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD4P09016 AL132657.2-201ENST00000564417 358 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.37□□□□□ -1.87
HOXD4P09016 ZNF415P1-201ENST00000582279 1166 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC020914.6-201ENST00000594327 272 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC008687.2-201ENST00000597865 520 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AL158042.1-201ENST00000605338 460 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC018638.7-201ENST00000605836 1114 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 RNU1-30P-201ENST00000606575 163 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC011816.2-201ENST00000607089 556 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC131235.4-201ENST00000609288 620 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 MIR7975-201ENST00000619350 68 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC018816.2-201ENST00000621460 353 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 AC026422.1-201ENST00000623961 452 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD4P09016 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD4P09016 MIR7153-201ENST00000637758 57 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
HOXD4P09016 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 AC107081.3-201ENST00000612715 2034 ntBASIC3.37□□□□□ -1.87
HOXD4P09016 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
HOXD4P09016 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXD4P09016 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
HOXD4P09016 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD4P09016 AC016716.1-201ENST00000265882 708 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 RNU5D-1-201ENST00000363299 116 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 RNA5SP424-201ENST00000390988 115 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD4P09016 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AL133264.1-201ENST00000407157 562 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC009518.2-201ENST00000418056 731 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 USP9YP26-201ENST00000421008 661 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC092832.1-201ENST00000422934 400 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AL513175.1-201ENST00000431492 780 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD4P09016 UBE2D3P1-201ENST00000436669 444 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD4P09016 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD4P09016 RPL23AP15-201ENST00000450202 459 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 MRPS31P2-201ENST00000451581 518 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC098824.1-201ENST00000453565 980 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD4P09016 NF1P3-201ENST00000457709 450 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 PNPLA4P1-201ENST00000458328 305 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD4P09016 AL358832.1-201ENST00000497800 389 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD4P09016 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD4P09016 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD4P09016 AC079395.1-201ENST00000510981 262 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 PTGES3P3-201ENST00000511479 482 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 RNU6-202P-201ENST00000515998 96 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AP001207.1-201ENST00000524051 481 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC087373.1-201ENST00000524920 491 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.36□□□□□ -1.87
HOXD4P09016 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD4P09016 AL139174.1-201ENST00000531489 886 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 UBE2NP1-201ENST00000545592 458 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD4P09016 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.36□□□□□ -1.87
HOXD4P09016 AC008015.1-201ENST00000555505 465 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD4P09016 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD4P09016 MIR5195-201ENST00000583555 115 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AL109653.1-201ENST00000603091 248 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AL031281.1-201ENST00000604049 488 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 MIR7851-201ENST00000610611 160 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AL139418.1-201ENST00000613613 177 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD4P09016 AC121761.2-201ENST00000617300 689 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC116618.1-201ENST00000634617 774 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC068620.4-201ENST00000636730 1182 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC103706.2-201ENST00000638080 240 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 MTND5P28-201ENST00000438005 1594 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 AC092326.2-201ENST00000624772 1561 ntBASIC3.36□□□□□ -1.87
HOXD4P09016 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD4P09016 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.36□□□□□ -1.87
HOXD4P09016 MTND5P3-201ENST00000438536 1800 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AL049781.1-201ENST00000623195 3585 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD4P09016 UBE3AP2-201ENST00000429033 2259 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD4P09016 MTCO1P24-201ENST00000515438 1558 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD4P09016 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD4P09016 AC005183.1-201ENST00000603687 1979 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
HOXD4P09016 MIR218-2-201ENST00000385006 110 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RNU6-1300P-201ENST00000391046 108 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 TAF9BP1-201ENST00000396646 746 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 BTBD10P2-201ENST00000404779 676 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RPL23AP47-201ENST00000408017 460 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 RNU2-42P-201ENST00000410697 113 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 ATP5A1P2-201ENST00000412323 255 ntBASIC3.35□□□□□ -1.87
HOXD4P09016 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD4P09016 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms