Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU6-1029P-201ENST00000384109 107 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AL583835.1-201ENST00000399570 407 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AL109941.1-201ENST00000401925 229 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AL136372.1-201ENST00000403060 228 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 RNU2-36P-201ENST00000410361 191 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 RNA5SP107-201ENST00000411358 122 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AL161631.1-201ENST00000417933 486 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AC068533.1-201ENST00000418542 415 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 RPL23AP38-201ENST00000423801 469 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXA3O43365 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 MTCYBP6-201ENST00000441810 138 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 Z80107.2-201ENST00000445127 392 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 MTND4P19-201ENST00000446659 478 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXA3O43365 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXA3O43365 AL118520.1-201ENST00000450770 291 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 snoU109.4-201ENST00000458953 143 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 Y_RNA.632-201ENST00000459189 102 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AC058823.1-201ENST00000485315 474 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AP003072.1-201ENST00000531740 145 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 GSTP1P1-201ENST00000548078 319 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXA3O43365 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 MIR3934-201ENST00000579806 107 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 AC011447.4-201ENST00000587562 111 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 AC020910.2-201ENST00000603635 610 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXA3O43365 MIR6798-201ENST00000612887 67 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 AL603758.1-201ENST00000618654 241 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 MIR4496-201ENST00000635896 61 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.24□□□□□ -1.73
HOXA3O43365 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXA3O43365 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
HOXA3O43365 AC092747.4-201ENST00000620519 1861 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA3O43365 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
HOXA3O43365 AP004289.2-201ENST00000444413 1457 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.24□□□□□ -1.73
HOXA3O43365 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA3O43365 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA3O43365 STX3-208ENST00000641815 3236 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA3O43365 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA3O43365 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA3O43365 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA3O43365 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC092681.1-201ENST00000297369 291 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC073343.1-201ENST00000328239 651 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 RNU5E-6P-201ENST00000365574 115 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AC019155.1-201ENST00000382242 574 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 RNU6-432P-201ENST00000384196 109 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HOXA3O43365 DBIP1-201ENST00000401435 260 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 Y_RNA.625-201ENST00000411256 107 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA3O43365 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AL451054.2-201ENST00000420896 202 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AC018630.2-202ENST00000422992 927 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 RPL35AP22-201ENST00000436855 335 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXA3O43365 LINC02210-201ENST00000444561 288 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AC092647.2-201ENST00000452998 253 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC005008.1-201ENST00000456151 612 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 RPL37P6-202ENST00000464216 403 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC083982.1-201ENST00000485679 344 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA3O43365 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXA3O43365 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 Y_RNA.665-201ENST00000516177 98 ntBASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms