Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 EEF1A1P1-201ENST00000447052 739 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AC004453.1-201ENST00000487895 408 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 RNU2-53P-201ENST00000516257 147 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 CYCSP27-201ENST00000527643 293 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AC124068.1-201ENST00000563131 678 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AC092447.9-201ENST00000603395 144 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 ATP1B3P1-201ENST00000605365 821 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AC023813.4-201ENST00000607580 580 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 AL138825.1-201ENST00000618587 192 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
USP3Q9Y6I4 OR4F13P-202ENST00000560066 2054 ntBASIC5.84□□□□□ -1.47
USP3Q9Y6I4 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.84□□□□□ -1.48
USP3Q9Y6I4 AC104118.1-201ENST00000607625 1589 ntBASIC5.84□□□□□ -1.48
USP3Q9Y6I4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.84□□□□□ -1.48
USP3Q9Y6I4 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.48
USP3Q9Y6I4 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.84□□□□□ -1.48
USP3Q9Y6I4 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
USP3Q9Y6I4 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 MTND5P27-201ENST00000428871 1720 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 RNU6-393P-201ENST00000384475 107 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 SNORA41-201ENST00000384675 132 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 SNORD70.1-201ENST00000391007 85 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 MTCO3P45-201ENST00000443036 613 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC092324.1-201ENST00000468671 324 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 RN7SL184P-201ENST00000488308 297 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC135721.1-201ENST00000497954 479 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC022493.2-201ENST00000506122 481 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 PGAM1P13-201ENST00000507497 754 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 ATP5LP3-201ENST00000514223 304 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC012400.1-201ENST00000518452 381 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 Z98751.3-201ENST00000604447 521 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC004805.2-201ENST00000605382 482 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 DUSP12P1-201ENST00000612874 516 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC022467.1-201ENST00000614738 749 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 AC114774.1-201ENST00000507410 1770 ntBASIC5.83□□□□□ -1.48
USP3Q9Y6I4 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
USP3Q9Y6I4 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC025470.1-201ENST00000510053 2032 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC068870.1-201ENST00000563737 2455 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 SNORD62.1-201ENST00000362541 86 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 SNORA51.1-201ENST00000363243 140 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 RHOT1P2-201ENST00000366423 333 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 Y_RNA.424-201ENST00000384063 103 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 SNORD51-201ENST00000384320 80 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 RNU6-713P-201ENST00000384761 107 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 RNU6-823P-201ENST00000391042 103 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 RNU2-23P-201ENST00000410545 195 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 EIF4EP1-201ENST00000422311 642 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.82□□□□□ -1.48
USP3Q9Y6I4 AC099670.2-201ENST00000435130 321 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 HIGD1AP11-201ENST00000438361 280 ntBASIC5.82□□□□□ -1.48
USP3Q9Y6I4 OSTCP8-201ENST00000445117 448 ntBASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms